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Report for CCDS26957.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26957.1 Public Mus musculus 14 Prxl2a 23 108 98 CCDS HistoryNCBI Gene:70564Re-query CCDS DB by CCDS ID:26957.1Re-query CCDS DB by GeneID:70564See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26957.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022317.14 ENSMUSP00000022317.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022317.14Link to Ensembl Protein Viewer:ENSMUSP00000022317.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022317Re-query CCDS DB by Protein ID:ENSMUSP00000022317
Original member Current member NCBI NM_001316737.1 NP_001303666.1 Accepted alive Link to Nucleotide Sequence:NM_001316737.1Link to Protein Sequence:NP_001303666.1Re-query CCDS DB by Nucleotide ID:NM_001316737Re-query CCDS DB by Protein ID:NP_001303666Link to BLAST:NP_001303666.1
Original member Current member NCBI NM_001316739.1 NP_001303668.1 Accepted alive Link to Nucleotide Sequence:NM_001316739.1Link to Protein Sequence:NP_001303668.1Re-query CCDS DB by Nucleotide ID:NM_001316739Re-query CCDS DB by Protein ID:NP_001303668Link to BLAST:NP_001303668.1
Original member Current member NCBI NM_027464.4 NP_081740.2 Accepted alive Link to Nucleotide Sequence:NM_027464.4Link to Protein Sequence:NP_081740.2Re-query CCDS DB by Nucleotide ID:NM_027464Re-query CCDS DB by Protein ID:NP_081740Link to BLAST:NP_081740.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303666.1 218 Q9CYH2 218 100% 0 0
NP_001303668.1 218 Q9CYH2 218 100% 0 0
NP_081740.2 218 Q9CYH2 218 100% 0 0

Chromosomal Locations for CCDS 26957.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 40994524 40994637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 40997713 40997877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 40998844 40998984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 41002436 41002527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 41004041 41004185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGGGTATGTGGTCCATCGGTGTGGGAGCTGTGGGGGCCGCTGCTGTGGCACTGCTCCTGGCCAACACAG
ACATGTTTCTGTCCAAGCCCCGAAAAGCAGCACTGGAATATTTGGAAGACATAGACCTGAAAACACTGGA
GAAAGAACCAAGGACATTCAAAGCAAAGGAGCTGTGGGAGAAGAACGGGGCTGTGATTATGGCTGTACGC
AGGCCAGGCTGCTTTCTCTGCCGAGCGGAAGCAGCAGACCTGATGTCCTTGAAGCCCAAGTTGGATGAGC
TAGGTGTCCCTCTCTATGCGGTGGTGAAGGAGCAGGTGAAGAGAGAAGTGGAAGATTTCCAACCTTACTT
CAAAGGGGAAATCTTCCTGGATGAAAAGAAAAAATTCTATGGTCCAGAGAGGCGGAAGATGATGTTCATG
GGCCTCATCCGATTGGGGGTGTGGTATAACTCCTTTCGAGCCTGGAATGGAGGCTTCTCTGGAAACCTAG
AAGGCGAAGGCTTCATCCTTGGAGGAGTTTTTGTGATAGGATCTGGAAAACAGGGCATCCTTCTTGAGCA
CCGAGAAAAAGAATTTGGAGACAGAGTGAACCCACTCTCTGTTCTGGAGGCTGTAAAGAAAATCAAGCTA
CAGACTCCAGCGTCCGGGAGAAGCTGA

Translation (218 aa):
MGMWSIGVGAVGAAAVALLLANTDMFLSKPRKAALEYLEDIDLKTLEKEPRTFKAKELWEKNGAVIMAVR
RPGCFLCRAEAADLMSLKPKLDELGVPLYAVVKEQVKREVEDFQPYFKGEIFLDEKKKFYGPERRKMMFM
GLIRLGVWYNSFRAWNGGFSGNLEGEGFILGGVFVIGSGKQGILLEHREKEFGDRVNPLSVLEAVKKIKL
QTPASGRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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