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Report for CCDS26703.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26703.1 Public Mus musculus 13 Poc5 23 108 98 CCDS HistoryNCBI Gene:67463Re-query CCDS DB by CCDS ID:26703.1Re-query CCDS DB by GeneID:67463See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26703.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099295.5 ENSMUSP00000096898.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099295.5Link to Ensembl Protein Viewer:ENSMUSP00000096898.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000099295Re-query CCDS DB by Protein ID:ENSMUSP00000096898
Original member Current member NCBI NM_026173.3 NP_080449.1 Accepted alive Link to Nucleotide Sequence:NM_026173.3Link to Protein Sequence:NP_080449.1Re-query CCDS DB by Nucleotide ID:NM_026173Re-query CCDS DB by Protein ID:NP_080449Link to BLAST:NP_080449.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080449.1 558 Q9DBS8-1 558 100% 0 0

Chromosomal Locations for CCDS 26703.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 96391598 96391675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96393227 96393344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96394492 96394569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96396640 96396830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96398694 96398870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96400750 96400854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96401576 96401755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96402880 96403033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96404406 96404683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96410590 96410766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96414479 96414619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1677 nt):
ATGTCATCTGATGAGGACAAGTGTTCACTTCATGTGGCTCACAATGACTCTGACCGTTCTGTCTCCACAG
ACCTTCAGGAGGAGTATGAAGAGCTGCTTCGCTATGCTATTGTGAATCCAAATGTTGAATGCAGTGCTTC
GCAGCCATCTCACCTTAGAGGAGAAGTGGCACCGGATAGATTCCCTACGCTAGCTGGAAATAACCCTGTA
AGAGACACTGAACTGGAAGTGGGAAAAGGATCCGATTTAAATATTTCAAGCCATTCAAAATCAGGGTCAC
CCAGGAAGCCATCTCACCCAGTCATGGACTTTTTCAGCTCACATGTTTTAGGTGACTCTTCCTCGCCAGC
CTCTCTTTCTACTCGGACAGATGCCCATGAAATAAATGGGGGGGAGCATCTCGTCTCTGATGAAAATTTT
CAGAAGTTGGAGAATATACTTGATATCTGGAGTTCAGGTCTTAAGACGAACGTTTTGTCTGAGCTGAGTA
AGTGGAGGCTGAACTTTATCGACTGGCACCGAATGGAGATGAAGAAGGAGAAGGAAAAGCATGCGGTGGT
CGTGAAGCAGCTGTCAAACCAGATCTCGGACCTGAAGGAGCTGCAGAAAGCCTTTGAGATCTCCATCGGG
AGAAAGGATGAGGTGATTTCCAACCTGTCTCGTGCCATCGGCAAGCAAAAGGAGAGGATAGAGTTAATGA
AAAGCTTCTTCCGCTGGAGGATCGGCCATGTCAAATCCAGACAGGAAATTTATGAAGGTAAACTGGCTGA
CCAGTACTTTCAGAGAACTTTGCTGAAGAAAGTCTGGAAGGGCTGGCGCTCTGTGGTACAGAGGCAGTGG
AAAGATGTGGTGGAACGTGCGTGCCAAGCGAGGGCTGAAGAAGTATGTGTGCAGATCTCCAATGATTATG
AAGCCAGACTAGCTATGTTATCTGGAGCTTTGGAAAATGCAAAGGCTGAGATTCAAAAAATGCAGCAGGA
AAAAGACCATTTCGAAGACTCCATGAAGAAAGCATTCATGCGGGGAGTGTGTGCATTAAATCTGGAGGCC
ATGACCATATTTCAGAACAAAAATGAGGCAGGGATAGACTTCACAAATAATAAAAAGGAAGAGAGTGGCC
CTGGCGGTCCCGGAAGAGAGCCTTCTGCTCACTTGGATACTTCTTCGTCCACGATGCCGTCAGCAGTTCC
GTCACAGCTGCTGCCCTCTGGACCATTAGCAGCAGGAGTAGCCAGTGCCACTGCCTTTCCCTCCGCTGCT
TCCCTGACCTCGGCCGGAGCTACATCGGCCTCTTCTCTTCACGTTCCCATCTCTATTCTCAGTGCAGGAT
CTGCAGCTGCTCCTGCCCCAGAGGAATCGTACGCACCAAGAGTCGTGACCGCAGCCCAGCAGAAAGCTGG
GAAGACAATTACAGCCCGGATCACAGGTCGGTCTGATTTTGGTTCCAAAGCTAGAATCAACAGCAGTTTG
GCGATAATGGGAGTCTCTCCTCCCATGGGCTCAGTCGTTGTGGAGAAACATCATCCAGTCACAGTGCAAA
CCATTCCTCAGGCAACTGCTGCCAAGTACCCACGGACCATCCATCCTGAAAGCAGCATCTCCGCTTCTAG
GTCTCTCGGAGCCAGGCCGGGCCACGCCCAGTCTCTCTCAGTTCAGTCGATAAAAGTGGTTGACTAG

Translation (558 aa):
MSSDEDKCSLHVAHNDSDRSVSTDLQEEYEELLRYAIVNPNVECSASQPSHLRGEVAPDRFPTLAGNNPV
RDTELEVGKGSDLNISSHSKSGSPRKPSHPVMDFFSSHVLGDSSSPASLSTRTDAHEINGGEHLVSDENF
QKLENILDIWSSGLKTNVLSELSKWRLNFIDWHRMEMKKEKEKHAVVVKQLSNQISDLKELQKAFEISIG
RKDEVISNLSRAIGKQKERIELMKSFFRWRIGHVKSRQEIYEGKLADQYFQRTLLKKVWKGWRSVVQRQW
KDVVERACQARAEEVCVQISNDYEARLAMLSGALENAKAEIQKMQQEKDHFEDSMKKAFMRGVCALNLEA
MTIFQNKNEAGIDFTNNKKEESGPGGPGREPSAHLDTSSSTMPSAVPSQLLPSGPLAAGVASATAFPSAA
SLTSAGATSASSLHVPISILSAGSAAAPAPEESYAPRVVTAAQQKAGKTITARITGRSDFGSKARINSSL
AIMGVSPPMGSVVVEKHHPVTVQTIPQATAAKYPRTIHPESSISASRSLGARPGHAQSLSVQSIKVVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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