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Report for CCDS26553.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26553.1 Public Mus musculus 13 Txndc15 23 108 98 CCDS HistoryNCBI Gene:69672Re-query CCDS DB by CCDS ID:26553.1Re-query CCDS DB by GeneID:69672See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26553.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021959.10 ENSMUSP00000021959.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021959.10Link to Ensembl Protein Viewer:ENSMUSP00000021959.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000021959Re-query CCDS DB by Protein ID:ENSMUSP00000021959
Original member Current member NCBI NM_175150.3 NP_780359.2 Accepted alive Link to Nucleotide Sequence:NM_175150.3Link to Protein Sequence:NP_780359.2Re-query CCDS DB by Nucleotide ID:NM_175150Re-query CCDS DB by Protein ID:NP_780359Link to BLAST:NP_780359.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780359.2 344 Q6P6J9 344 100% 0 0

Chromosomal Locations for CCDS 26553.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55714778 55714844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55717792 55718267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55721579 55721742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55724508 55724638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55725667 55725863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGCAACTCCTCTGCTGGTGGCAAGTCCTGCTGTGGGTGCTGGGCCTTCCGGCCCACGGCCTGGAGGTTG
CAGAGGACAGTGGTCACCCCTGGCGGGAGGAGCGGCCTGTCCCTGCTCTCCAGGTAGGAGCTGTGTATCT
GCATGAAGAGGAGGTTGCTCAGGACCATCGGGACCAGGCAAGAGCGGCGGAACCCATGGAGGCCTCTCTG
GGTCCGCGCGGAGATCCCATGGTGGTGCTGTCAGTGGTCCCTGGGGCAGCTGAGGACCAACGGAGCCCCG
AGGCCCACGATGGCACCTGCAGTGCGCAGGGAGAGGAGGACCCGAGCTGTGGCCGAGAGAACCTCTTCGG
GCTGCAGGGGGCAGGCGGCTTCCAGGATCGGGAAGAGGAGTACTATGCTGAGCCTGGCGTGACTGAGGCC
GAGCCTGTAGCCACCGAGGATGCCAACAGCACTGACAGCCTCAAGTCCCCCAAGGTGAATTGTGAGGAGA
GGAATGTGACTGGGCTAGAAAACTTCACTCTGAAGATTTTAAATATGTCCCAGGACCTCATGGATTTCCT
AAACCCAAATGGTAGTGACTGTACACTGGTCCTCTTCTACACCCCGTGGTGCCGGTTTTCTGCCAGCCTG
GCTCCTCATTTTAACTCCCTGCCCCGGGCGTTTCCAACACTTGGCTTCTTGGCTCTGGATGCATCTCAGC
ACAGCAGCCTTTCTACCAGATTTGGCACTGTAGCTGTCCCTAACATTTTGTTATTTCAAGGAGCTAAACC
AATGGCAAGGTTTAACCATACAGATCGCACCCTGGAAACACTGAAAATCTTCATTTTCAATCAGACGGGT
ATAGAAGCCAAGAAAAATGTGGTGGTAACGCAGGCTGACCAGATGGGCCCTCTCCCCAGCACTTTGATAA
AGACTGTGGATTGGTTGCTGGTGTTTTCCTTGTTCTTTTTAATTAGTTTCATTATGTATGCTACCATCCG
CACTGAGAGTATTCGGTGGCTGATTCCAGGACAAGAACAGGAACACGCAGAGTAA

Translation (344 aa):
MQLLCWWQVLLWVLGLPAHGLEVAEDSGHPWREERPVPALQVGAVYLHEEEVAQDHRDQARAAEPMEASL
GPRGDPMVVLSVVPGAAEDQRSPEAHDGTCSAQGEEDPSCGRENLFGLQGAGGFQDREEEYYAEPGVTEA
EPVATEDANSTDSLKSPKVNCEERNVTGLENFTLKILNMSQDLMDFLNPNGSDCTLVLFYTPWCRFSASL
APHFNSLPRAFPTLGFLALDASQHSSLSTRFGTVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQTG
IEAKKNVVVTQADQMGPLPSTLIKTVDWLLVFSLFFLISFIMYATIRTESIRWLIPGQEQEHAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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