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Report for CCDS26451.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26451.2 Public Mus musculus 13 Rpp40 23 108 98 CCDS HistoryNCBI Gene:208366Re-query CCDS DB by CCDS ID:26451.2Re-query CCDS DB by GeneID:208366See the combined annotation on chromosome 13 in Sequence Viewer

Public Note for CCDS 26451.2
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 26451.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171686.8 ENSMUSP00000130290.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171686.8Link to Ensembl Protein Viewer:ENSMUSP00000130290.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000171686Re-query CCDS DB by Protein ID:ENSMUSP00000130290
Original member NCBI NM_145938.4 NP_666050.3 Updated not alive Link to Nucleotide Sequence:NM_145938.4Link to Protein Sequence:NP_666050.3Re-query CCDS DB by Nucleotide ID:NM_145938Re-query CCDS DB by Protein ID:NP_666050
Current member NCBI NM_145938.5 NP_666050.3 Accepted alive Link to Nucleotide Sequence:NM_145938.5Link to Protein Sequence:NP_666050.3Re-query CCDS DB by Nucleotide ID:NM_145938Re-query CCDS DB by Protein ID:NP_666050Link to BLAST:NP_666050.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666050.3 363 Q8R1F9 363 100% 0 0

Chromosomal Locations for CCDS 26451.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 35896727 35896925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 35898565 35898699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 35898815 35899013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 35901306 35901431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 35902013 35902108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 35903688 35903756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 35904419 35904563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 35906204 35906326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1092 nt):
ATGGCCACGCTGCGCAGGCTGCAAGAGGCGCCTCGGCACTTACTGGTCTGTGAGAAATCCAACTTCGGCC
ACGATAAGTCTCGCCATAAGCATCTCGTGGAGACGCACTATCATAATTACAGGGTTTCATTTCTTATTCC
TGAATGTGGGCTTCTATCAAAAGAGCTAAAAAGCCTGGTCATGGACATTGGACCCTATTACTCTGTGAAG
AACTTACCTCTTCATGAATTAATTACACACGAGTTCATCAACACCTTTGTAAAGAAAGGTTCATTCTCTG
CATTAACATACAATACAAGTATTGATGAGGATAATACTGTTGCTCTCCTACCAAATGGGAAATTAATTTT
ATCACTAGATAAAGATACTTACGAAGAAACCGGACTTCAAGGTCGTCCATCTCGGTATTCTGGCAGAAAA
AGTATGAAGTTTGTCATTTCCATTGACCTAATGGATTTATCCCTTAACCTGGATTCTAAGAAGTACAGAA
GAATATCTTGGTCCTTCAAAGAGAAGAAGCCTTTGAAGTTTGATTTCCTTTTGGCTTGGCATCCTACAGG
TACAGAAGAATCAACAATGATGTCGTACTTTTCCAAATACCAAATTCAGGAGCATCAGCCCAAAGTGGCA
TTGAGCACAGTGAGAGAGCTGCAGTGCCCAGTGCTGCGGAGCAGCGGGCTTGCAGGAGAGCCGGAGGAGG
CCTGCAGTGCCCTGGAGTTCTTTGACTGGCTTGGTGCTGTCTTCTGCAGTGCGGACCTAAATAACGAGCC
TTATAACTTCATATCAACCTACTGCTGTCCCCAGCCAAGCGCCGTGGTAGCCCAAGCTTTTCTGTGTACA
ATCACAGGTTTCATATTGCCAGAGAAGATACATGTCCTTCTGGAACAGCTGTGTCACTACTTCGATGAAC
CAAAGTTGGCTCCATGGGTCACCTTGACAGTTCAAGGCTTTGCAGACAGCCCCGTTGCCTGGAGAGAGAA
GGAACATGGCTTCCATAAAGGAGGCGAGCACTTGTACAATTTTGTGGTTTTCAATAATCAGGACTATTGG
CTTCAGATGGCTGTTGGGGCAAATGATGACTGCCCACCATAA

Translation (363 aa):
MATLRRLQEAPRHLLVCEKSNFGHDKSRHKHLVETHYHNYRVSFLIPECGLLSKELKSLVMDIGPYYSVK
NLPLHELITHEFINTFVKKGSFSALTYNTSIDEDNTVALLPNGKLILSLDKDTYEETGLQGRPSRYSGRK
SMKFVISIDLMDLSLNLDSKKYRRISWSFKEKKPLKFDFLLAWHPTGTEESTMMSYFSKYQIQEHQPKVA
LSTVRELQCPVLRSSGLAGEPEEACSALEFFDWLGAVFCSADLNNEPYNFISTYCCPQPSAVVAQAFLCT
ITGFILPEKIHVLLEQLCHYFDEPKLAPWVTLTVQGFADSPVAWREKEHGFHKGGEHLYNFVVFNNQDYW
LQMAVGANDDCPP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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