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Report for CCDS26181.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26181.1 Public Mus musculus 12 Mark3 23 108 98 CCDS HistoryNCBI Gene:17169Re-query CCDS DB by CCDS ID:26181.1Re-query CCDS DB by GeneID:17169See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26181.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084953.12 ENSMUSP00000082017.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084953.12Link to Ensembl Protein Viewer:ENSMUSP00000082017.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000084953Re-query CCDS DB by Protein ID:ENSMUSP00000082017
Original member Current member NCBI NM_021516.4 NP_067491.2 Accepted alive Link to Nucleotide Sequence:NM_021516.4Link to Protein Sequence:NP_067491.2Re-query CCDS DB by Nucleotide ID:NM_021516Re-query CCDS DB by Protein ID:NP_067491Link to BLAST:NP_067491.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067491.2 744 Q03141-3 744 100% 0 0

Chromosomal Locations for CCDS 26181.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 111575051 111575101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111592577 111592768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111604511 111604564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111615396 111615444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111618318 111618383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111623245 111623315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111624487 111624543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111627076 111627312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111627479 111627598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111627815 111627914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111628190 111628302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111628962 111629115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111633617 111633834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111639937 111640040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111647471 111647728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111653390 111653434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111655270 111655615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2235 nt):
ATGTCCACTAGGACCCCTTTGCCAACGGTGAATGAACGAGACACTGAAAACCACATTTCACATGGAGACG
GGAGGCAAGAAGTCACCTCCCGCACCGGGCGCTCTGGAGCTCGGTGTAGAAACTCAATAGCTTCCTGTGC
AGATGAACAGCCTCACATCGGAAACTACAGACTGTTGAAAACAATCGGCAAGGGGAACTTTGCAAAAGTG
AAATTGGCGAGACACATCCTCACAGGCCGAGAGGTTGCAATAAAAATAATTGACAAAACTCAGTTGAATC
CAACAAGTCTACAAAAGCTCTTCAGAGAAGTAAGAATAATGAAGATTTTAAATCACCCAAACATAGTGAA
GTTGTTCGAAGTCATTGAAACGGAAAAAACTCTCTACTTAATCATGGAATATGCAAGTGGAGGTGAAGTA
TTTGACTATTTGGTTGCACATGGAAGAATGAAGGAAAAAGAAGCAAGAGCTAAATTTAGACAGATTGTTT
CCGCAGTACAGTATTGCCACCAAAAACGGATTGTTCACAGAGACCTCAAGGCTGAAAATCTGTTATTAGA
TGCGGATATGAACATTAAAATAGCAGATTTTGGTTTTAGCAATGAATTTACTGTTGGCAGTAAACTAGAC
ACGTTTTGTGGTAGTCCTCCATATGCAGCCCCTGAGCTCTTCCAGGGCAAGAAGTATGACGGGCCAGAAG
TCGACGTGTGGAGCCTCGGTGTCATTCTCTACACCCTAGTCAGTGGGTCGCTTCCCTTTGATGGTCAAAA
CCTGAAGGAACTGAGAGAGAGAGTACTCCGCGGGAAGTACAGAATCCCTTTCTACATGTCCACAGACTGC
GAGAACCTTCTCAAGCGCTTCCTGGTGCTGAACCCAGTTAAACGGGGCACTCTCGAGCAAATCATGAAGG
ACAGGTGGATCAATGCAGGCCATGAGGAGGATGAGCTTAAGCCATTTGTTGAACCAGAACTAGACATCTC
AGACCAGAAGAGAATAGATATTATGGTGGGAATGGGATATTCCCAAGAAGAAATTCAAGAATCTCTTAGC
AAAATGAAATACGATGAAATCACAGCTACTTACTTGCTACTGGGGAGGAAATCTGCAGAGCTGGACGCTA
GTGACTCCAGTTCTAGCAGCAACCTTTCACTTGCTAAGGTGCGGCCAAACAGTGACCTCAGCAATAGCAC
TGGCCAGTCTCCTCATCACAAAGGGCAGAGAAGTGTTTCCTCAAGTCAGAAGCAGAGACGGTACAGTGAC
CACGCTGGACCAGCTATTCCTTCAGTTGTGGCATATCCAAAGAGGAGTCAGACCAGCACTGCAGATAGTG
ACCTCAAAGAAGATGGAATTCCCTCCCGAAAATCAAGCAGCAGTGCTGTAGGAGGGAAGGGGATTGCTCC
TGCCAGTCCCATGCTTGGGAATGCAGGCAATCCCAATAAAGCCGATATCCCTGAGCGCAAGAAAAGCCCT
GCTGTGCCCAGTAGTAACACAGCATCTGGTGGGATGACACGGCGGAACACTTACGTTTGCAGCGAGAGAT
GTGCAGCAGACAGACATTCTGTGATTCAGAACGGCAAAGAAAACAGCGCTATTCCAGATGAGAGAACTCC
AGTTGCTTCAACCCACAGTATTAGCAGTGCGACCACCCCAGATCGCATCCGCTTTCCAAGGGGCACAGCC
AGCCGTAGCACTTTCCATGGCCAACCTCGGGAGCGGCGAACCGCAACATATAATGGCCCACCTGCCTCAC
CCAGCTTGTCCCATGAAGCCACACCGCTGTCTCAGACTCGAAGCCGAGGTTCCACTAATCTTTTTAGTAA
ATTAACTTCCAAACTCACAAGAAGACTTCCAACTGAATATGAGAGGAACGGGAGATATGAGGGCTCAAGT
CGCAATGTGTCTTCAGAGCAGAAGGATGAGAACAGAGAGGCCAAGCCCCGCTCCCTGCGCTTCACCTGGA
GCATGAAGACCACGAGCTCCATGGACCCCAGTGACATGATGCGGGAGATCCGCAAGGTGCTGGACGCCAA
TAACTGCGACTACGAGCAGAGGGAGCGCTTCCTGCTCTTCTGTGTCCATGGCGACGGGCACGCAGAGAAC
CTGGTACAGTGGGAAATGGAAGTCTGTAAGCTGCCAAGACTGTCTCTGAATGGAGTCCGGTTTAAGCGGA
TATCAGGGACATCCATAGCTTTCAAAAATATTGCTTCCAAAATTGCCAATGAGCTAAAGCTGTAA

Translation (744 aa):
MSTRTPLPTVNERDTENHISHGDGRQEVTSRTGRSGARCRNSIASCADEQPHIGNYRLLKTIGKGNFAKV
KLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIMEYASGGEV
FDYLVAHGRMKEKEARAKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGSKLD
TFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDC
ENLLKRFLVLNPVKRGTLEQIMKDRWINAGHEEDELKPFVEPELDISDQKRIDIMVGMGYSQEEIQESLS
KMKYDEITATYLLLGRKSAELDASDSSSSSNLSLAKVRPNSDLSNSTGQSPHHKGQRSVSSSQKQRRYSD
HAGPAIPSVVAYPKRSQTSTADSDLKEDGIPSRKSSSSAVGGKGIAPASPMLGNAGNPNKADIPERKKSP
AVPSSNTASGGMTRRNTYVCSERCAADRHSVIQNGKENSAIPDERTPVASTHSISSATTPDRIRFPRGTA
SRSTFHGQPRERRTATYNGPPASPSLSHEATPLSQTRSRGSTNLFSKLTSKLTRRLPTEYERNGRYEGSS
RNVSSEQKDENREAKPRSLRFTWSMKTTSSMDPSDMMREIRKVLDANNCDYEQRERFLLFCVHGDGHAEN
LVQWEMEVCKLPRLSLNGVRFKRISGTSIAFKNIASKIANELKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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