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Report for CCDS26106.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26106.1 Public Mus musculus 12 Kcnk13 23 108 98 CCDS HistoryNCBI Gene:217826Re-query CCDS DB by CCDS ID:26106.1Re-query CCDS DB by GeneID:217826See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26106.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049788.8 ENSMUSP00000051846.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049788.8Link to Ensembl Protein Viewer:ENSMUSP00000051846.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000049788Re-query CCDS DB by Protein ID:ENSMUSP00000051846
Original member Current member EBI ENSMUST00000160413.7 ENSMUSP00000123916.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160413.7Link to Ensembl Protein Viewer:ENSMUSP00000123916.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160413Re-query CCDS DB by Protein ID:ENSMUSP00000123916
Original member Current member EBI ENSMUST00000177549.7 ENSMUSP00000136882.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177549.7Link to Ensembl Protein Viewer:ENSMUSP00000136882.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177549Re-query CCDS DB by Protein ID:ENSMUSP00000136882
Original member Current member NCBI NM_001164426.1 NP_001157898.1 Accepted alive Link to Nucleotide Sequence:NM_001164426.1Link to Protein Sequence:NP_001157898.1Re-query CCDS DB by Nucleotide ID:NM_001164426Re-query CCDS DB by Protein ID:NP_001157898Link to BLAST:NP_001157898.1
Original member Current member NCBI NM_001164427.1 NP_001157899.1 Accepted alive Link to Nucleotide Sequence:NM_001164427.1Link to Protein Sequence:NP_001157899.1Re-query CCDS DB by Nucleotide ID:NM_001164427Re-query CCDS DB by Protein ID:NP_001157899Link to BLAST:NP_001157899.1
Original member Current member NCBI NM_146037.2 NP_666149.1 Accepted alive Link to Nucleotide Sequence:NM_146037.2Link to Protein Sequence:NP_666149.1Re-query CCDS DB by Nucleotide ID:NM_146037Re-query CCDS DB by Protein ID:NP_666149Link to BLAST:NP_666149.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157898.1 405 Q8R1P5 405 100% 0 0
NP_001157899.1 405 Q8R1P5 405 100% 0 0
NP_666149.1 405 Q8R1P5 405 100% 0 0

Chromosomal Locations for CCDS 26106.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 99965947 99966280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100061002 100061885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1218 nt):
ATGGCTGGCCGCGGTTGCGGCTGCAGCCCCGGCCACCTGAACGAGGACAACGCGCGCTTCCTGCTGCTCG
CTGGGCTCATCCTGCTCTACCTGCTGGGCGGCGCCGCAGTCTTCTCCGCGCTGGAGCTAGCGCAGGAGTT
GCAGGCCAAGCAGCGCTGGGAAGAGCGCCTGGCCAACTTCAGCCGGGGCCACAACCTGAGCCGTGAAGAG
CTGCGAGGTTTCCTCCGCCACTACGAGGAAGCCACCAGGGCGGGCATCCGCATGGACAGCGTGCGCCCTC
GCTGGGACTTCACGGGCGCCTTCTACTTCGTGGGTACAGTGGTTTCTACCATAGGGTTTGGGATGACAAC
ACCAGCCACAACGGGAGGGAAGATTTTTCTGATCTTTTATGGTCTCATTGGATGTGCAAGTACCATCCTC
TTCTTCAACCTTTTCCTGGAGCGGCTGATCACTGTCATCGCCTGTGTCATGAGATCCTGTCACCAGCAGC
AGCTGCGCAGACGTGGGGCGGTGACCCAGGACAACATGAAGGCTCCTGAAAAGGGGGAGGCAGACAGCCT
GACTGGCTGGAAGCCCTCTGTGTACTACGTCATGCTGATCCTATGCTTGGCATCAGTGGCCATCTCCTGC
GGAGCCTCTGCTCTGTACACCACCATGGAGGGCTGGAGCTACTTTGACTCGGTCTACTTCTGTTTTGTGG
CTTTCAGCACCATTGGCTTCGGGGACCTGGTGAGCAGCCAGAATGCTCAGTATGAGAGCCAAGGACTCTA
CCGCTTCTTCAATTTCTTCCTCATCCTCATGGGTGTCTGCTGCATCTACTCTTTGTTTAACGTCATCTCC
ATCCTGATCAAACAGACTGTGAACTGGATCCTGAGGAAACTGGATAGCGGGTGCTTCCCACCATGCCAAA
GAGGACTCCTGCGGTCCAGGAGGAATGTGGTGATGCCGGGTAACATCCGGAACAGGTGCAACATCTCCAT
AGAGACAGACGGGGTGATGGAAAGTGACACTGATGGACGACGTCTCTCGGGGGAGATGATCTCCATGAAG
GACACCAACAAGGTCTCCCTGGCCATCCTGCAGAAGCAGTTGTCCGAGATGGCCAATGGGGGACCCCACC
AGAACAGTGCATCCTCCCGGGATGATGAGTTCTCAGGGGGAGTGGGAGCCTTTGCAGTAATGAATAACAG
GTTGGCAGAGACCAGTGGAGATAGGTAG

Translation (405 aa):
MAGRGCGCSPGHLNEDNARFLLLAGLILLYLLGGAAVFSALELAQELQAKQRWEERLANFSRGHNLSREE
LRGFLRHYEEATRAGIRMDSVRPRWDFTGAFYFVGTVVSTIGFGMTTPATTGGKIFLIFYGLIGCASTIL
FFNLFLERLITVIACVMRSCHQQQLRRRGAVTQDNMKAPEKGEADSLTGWKPSVYYVMLILCLASVAISC
GASALYTTMEGWSYFDSVYFCFVAFSTIGFGDLVSSQNAQYESQGLYRFFNFFLILMGVCCIYSLFNVIS
ILIKQTVNWILRKLDSGCFPPCQRGLLRSRRNVVMPGNIRNRCNISIETDGVMESDTDGRRLSGEMISMK
DTNKVSLAILQKQLSEMANGGPHQNSASSRDDEFSGGVGAFAVMNNRLAETSGDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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