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Report for CCDS26033.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26033.1 Public Mus musculus 12 Riox1 23 108 98 CCDS HistoryNCBI Gene:71952Re-query CCDS DB by CCDS ID:26033.1Re-query CCDS DB by GeneID:71952See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26033.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053744.8 ENSMUSP00000057984.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053744.8Link to Ensembl Protein Viewer:ENSMUSP00000057984.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000053744Re-query CCDS DB by Protein ID:ENSMUSP00000057984
Original member Current member NCBI NM_023633.3 NP_076122.2 Accepted alive Link to Nucleotide Sequence:NM_023633.3Link to Protein Sequence:NP_076122.2Re-query CCDS DB by Nucleotide ID:NM_023633Re-query CCDS DB by Protein ID:NP_076122Link to BLAST:NP_076122.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076122.2 603 Q9JJF3 603 100% 0 0

Chromosomal Locations for CCDS 26033.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 83950692 83952503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1812 nt):
ATGGACGAGCTACCGAATGGCAACGGTGCGGCGCTGCTGAAGCGCGGGCGGGGGAGGCGCCGGCGGCACC
CGCAGTCGCAGCCCCGCGGCGCGTCGGTCTTGGCCCTGCCCTTGCGGCCCCGGAAGATCCGAAGGCACCG
GAAAAGTGCGGCGGCGTCCCGCGTGGCCGCGCTGAGAGCTCGCGCGCTCCGGAGCGAGGACTCGGACTCG
AAAGTGGCGGTGGCCTCGGTTCGGGGCAAGCGGAAGAGGCCGGCAGAGCTGCTGGAGGCCTCGCGGTCGG
CGGAGCCGCGGCCGGTGTCAGCGCGCCCGAGGTCGGCTTCGGCGACGCTGCCGAGCCGCGTGGAGGGATG
GGCTGCGCTCTCCCGGAACCTGGGGACGGCCGCTCCGCCGCCGCCGGGCTCGCACGCGGATGAGCCGGGG
CGACCCCGGGCTTCGCCGCTGCAGCAGGTACTGACGGAGCTGAACGGCATCCCCAGCAGCCGGAGGCGCG
CCGCCCGCCTCTTCGAGTGGCTCCTGGCGCCCCTGCCTCCGGACCACTTCTACCGGCGGCTGTGGGAGCG
GGAGGCGGTGCTGGTGCGGCGGCAGGACCGCAGCTACTACGAGGGTCTCTTCTCCACCGCCGACCTGGAC
TCGATGCTGCGCTACGAGGACGTGCAATTCGGGCAGCATCTGGACGCCGCGCGCTACGTCGATGGACGGC
GGGAGACCTTGAACCCGCCGGGCCGCGCGCTTCCCGCCGCCGCGTGGTCCTTGTACCGAGCCGGCTGCTC
CTTGCGCCTCCTGTGCCCGCAAGCCTTCTCGCCCACCGTGTGGCAGTTTCTGGCCGTGCTCCAGGAGCAG
TTTGGCAGCATGGCGGGCTCCAACGTCTACCTCACGCCCCCGGACTCGCAGGGCTTTGCTCCTCACTACG
ATGACATCGAGGCTTTCGTGTTGCAGCTGGAAGGTCGGAAACTCTGGCGCGTCTACCGACCGCGGGACCC
GAGTGAGGAGTTGGCCCTGACATCTAGTCCCAACTTCAGCCAGGAGGACCTTGGTGAGCCTGTGCTGCAA
ACGGTACTGGAACCTGGAGACCTGCTCTATTTTCCTCGGGGCTTCATTCACCAAGCTGAATGTCAGGATG
GAGTCCACTCCCTACACCTCACCTTGTCCACCTACCAGCGCAATACATGGGGTGACTTCCTGGAGGCTGT
ACTGCCTCTGGCAGTGCAAGCGGCCATAGAGGAGAACGTGGAGTTCCGCAGAGGCTTGCCCCGAGACTTC
ATGGATTACATGGGGGCCCAGCATTCCGACTCTAAGGATCCTAGAAGGACAGCTTTCATGGAAAAGGTGC
GGGTCTTGGTTGCTCGCCTGGGACACTTTGCTCCTGTCGATGCTGTGGCTGACCAGAGAGCAAAAGACTT
CATTCACGATTCCCTGCCCCCTGTGTTGACCGATAGGGAACGGGCTCTAAGTGTTCACGGGCTCCCAGTT
CGCTGGGAGGCTGGAGAACCCGTCAATGTGGGGGCCCAGCTGACAACTGAAACCCAAGTCCACATGCTTC
AGGACGGCGTAGCTCGGCTGGTGGGAGAGGGAGGCCGATTGTTCCTGTATCACACGGTGGAAAACTCTCG
AGTTTATCACCTAGAGGAACCCAAGTGCTTAGAAATCCACCCCCAGCAAGCCGACGCCATGGAACTCTTG
CTTCGCTCCTACCCGGAGTTTGTGAGAGTGGGGGACTTGCCATGTGACAGTGTGGAAGACCAGCTCTCCT
TGGCAACCATGTTATATGATAAGGGGCTGCTACTCACCAAGACACCTCTAGTTCCGAGTTAG

Translation (603 aa):
MDELPNGNGAALLKRGRGRRRRHPQSQPRGASVLALPLRPRKIRRHRKSAAASRVAALRARALRSEDSDS
KVAVASVRGKRKRPAELLEASRSAEPRPVSARPRSASATLPSRVEGWAALSRNLGTAAPPPPGSHADEPG
RPRASPLQQVLTELNGIPSSRRRAARLFEWLLAPLPPDHFYRRLWEREAVLVRRQDRSYYEGLFSTADLD
SMLRYEDVQFGQHLDAARYVDGRRETLNPPGRALPAAAWSLYRAGCSLRLLCPQAFSPTVWQFLAVLQEQ
FGSMAGSNVYLTPPDSQGFAPHYDDIEAFVLQLEGRKLWRVYRPRDPSEELALTSSPNFSQEDLGEPVLQ
TVLEPGDLLYFPRGFIHQAECQDGVHSLHLTLSTYQRNTWGDFLEAVLPLAVQAAIEENVEFRRGLPRDF
MDYMGAQHSDSKDPRRTAFMEKVRVLVARLGHFAPVDAVADQRAKDFIHDSLPPVLTDRERALSVHGLPV
RWEAGEPVNVGAQLTTETQVHMLQDGVARLVGEGGRLFLYHTVENSRVYHLEEPKCLEIHPQQADAMELL
LRSYPEFVRVGDLPCDSVEDQLSLATMLYDKGLLLTKTPLVPS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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