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Report for CCDS25830.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25830.1 Public Mus musculus 12 Hpcal1 23 108 98 CCDS HistoryNCBI Gene:53602Re-query CCDS DB by CCDS ID:25830.1Re-query CCDS DB by GeneID:53602See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25830.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071858.4 ENSMUSP00000071756.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071858.4Link to Ensembl Protein Viewer:ENSMUSP00000071756.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000071858Re-query CCDS DB by Protein ID:ENSMUSP00000071756
Original member Current member NCBI NM_001361645.1 NP_001348574.1 Accepted alive Link to Nucleotide Sequence:NM_001361645.1Link to Protein Sequence:NP_001348574.1Re-query CCDS DB by Nucleotide ID:NM_001361645Re-query CCDS DB by Protein ID:NP_001348574Link to BLAST:NP_001348574.1
Original member Current member NCBI NM_016677.5 NP_057886.1 Accepted alive Link to Nucleotide Sequence:NM_016677.5Link to Protein Sequence:NP_057886.1Re-query CCDS DB by Nucleotide ID:NM_016677Re-query CCDS DB by Protein ID:NP_057886Link to BLAST:NP_057886.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348574.1 193 P62748 193 100% 0 0
NP_057886.1 193 P62748 193 100% 0 0

Chromosomal Locations for CCDS 25830.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 17786171 17786548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17787545 17787650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17791107 17791204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGGGCAAGCAGAACAGCAAGCTGCGTCCTGAGGTGCTGCAGGACCTGCGGGAACACACGGAATTCACCG
ACCATGAGCTTCAGGAGTGGTACAAGGGCTTCCTCAAGGACTGCCCCACTGGCCACCTGACTGTGGACGA
GTTCAAGAAGATCTACGCCAACTTCTTCCCCTACGGCGATGCCTCCAAGTTCGCTGAACACGTCTTCCGC
ACCTTCGACACCAACAGCGATGGCACCATCGACTTCCGGGAGTTCATCATTGCTCTGAGTGTGACCTCTC
GGGGCAAGCTGGAACAGAAGCTCAAGTGGGCCTTTAGCATGTACGACCTGGACGGCAATGGCTACATCAG
CCGCAGTGAAATGCTGGAGATAGTGCAGGCCATCTACAAGATGGTGTCCTCCGTGATGAAGATGCCTGAG
GACGAGTCCACGCCCGAAAAGCGAACAGACAAGATCTTCAGACAGATGGACACAAACAATGATGGCAAAC
TGTCCCTGGAAGAATTCATCAAAGGTGCCAAGAGCGACCCATCCATTGTCCGGTTGCTGCAGTGTGATCC
CAGCAGTGCTAGCCAGTTCTGA

Translation (193 aa):
MGKQNSKLRPEVLQDLREHTEFTDHELQEWYKGFLKDCPTGHLTVDEFKKIYANFFPYGDASKFAEHVFR
TFDTNSDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISRSEMLEIVQAIYKMVSSVMKMPE
DESTPEKRTDKIFRQMDTNNDGKLSLEEFIKGAKSDPSIVRLLQCDPSSASQF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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