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Report for CCDS25451.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25451.1 Public Mus musculus 11 Tubg1 23 108 98 CCDS HistoryNCBI Gene:103733Re-query CCDS DB by CCDS ID:25451.1Re-query CCDS DB by GeneID:103733See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25451.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043680.8 ENSMUSP00000048036.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043680.8Link to Ensembl Protein Viewer:ENSMUSP00000048036.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000043680Re-query CCDS DB by Protein ID:ENSMUSP00000048036
Original member Current member NCBI NM_134024.3 NP_598785.1 Accepted alive Link to Nucleotide Sequence:NM_134024.3Link to Protein Sequence:NP_598785.1Re-query CCDS DB by Nucleotide ID:NM_134024Re-query CCDS DB by Protein ID:NP_598785Link to BLAST:NP_598785.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598785.1 451 P83887 451 100% 0 0

Chromosomal Locations for CCDS 25451.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101120194 101120242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101120547 101120659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101120831 101120998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101122673 101122741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101123414 101123493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101123913 101124039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101124233 101124319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101124423 101124572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101124970 101125122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101125203 101125364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101126032 101126229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1356 nt):
ATGCCGAGAGAAATCATCACCCTACAGTTGGGCCAGTGCGGCAATCAGATTGGGTTCGAGTTCTGGAAAC
AGCTATGTGCCGAGCATGGCATCAGTCCCGAGGGCATCGTAGAAGAGTTCGCCACGGAGGGCACTGACCG
AAAGGACGTCTTTTTCTACCAGGCAGATGATGAGCACTACATCCCCCGGGCTGTGCTGCTGGACCTGGAG
CCCCGGGTGATCCATTCCATCCTAAACTCCTCCTATGCTAAGCTCTACAACCCAGAGAACATCTACCTGT
CGGAGCATGGCGGAGGAGCTGGCAACAACTGGGCCAGCGGATTCTCCCAGGGAGAAAAAATCCACGAGGA
CATTTTTGACATCATAGATCGGGAGGCAGATGGCAGTGACAGTCTAGAGGGATTTGTACTGTGTCATTCC
ATTGCTGGGGGGACAGGCTCTGGCTTGGGCTCCTACCTCCTGGAACGGCTAAATGACAGGTACCCCAAAA
AACTAGTGCAGACATACTCTGTGTTCCCCAACCAGGATGAGATGAGTGACGTGGTGGTCCAACCCTACAA
CTCCCTCCTCACACTAAAGAGGCTGACCCAGAACGCGGACTGTGTGGTGGTGCTGGACAACACGGCCCTG
AACCTGATAGCCACAGACCGCCTACACATCCAGAACCCATCCTTCTCCCAGATCAACCAGCTGGTGTCCA
CCATCATGTCAGCCAGCACCACCACCCTGCGCTACCCTGGATACATGAACAATGACCTCATCGGCCTCAT
CGCCTCGCTCATTCCCACCCCTCGGCTCCACTTTCTCATGACTGGCTATACCCCCCTCACCACGGACCAG
TCAGTGGCCAGTGTGAGGAAGACAACAGTCCTGGATGTCATGAGGCGCCTGCTACAGCCCAAGAATGTGA
TGGTGTCCACAGGCCGGGATCGTCAGACCAACCACTGCTACATCGCCATCCTCAACATCATCCAGGGAGA
GGTGGACCCCACCCAGGTCCACAAGAGCCTGCAGAGGATCCGGGAAAGGAAACTGGCCAACTTCATCCCC
TGGGGCCCAGCCAGCATCCAGGTGGCCCTGTCAAGGAAGTCTCCCTACCTACCCTCAGCCCACCGGGTCA
GCGGGCTCATGATGGCCAACCACACCAGTATCTCCTCGCTCTTCGAACGGACCTGTCGCCAGTTTGACAA
GCTGCGGAAACGGGAGGCCTTCATGGAGCAGTTCCGCAAGGAGGACATCTTCAAGGACAATTTTGACGAG
ATGGACACCTCCAGGGAGATTGTGCAGCAGCTGATTGACGAGTACCACGCGGCCACACGGCCAGACTATA
TCTCCTGGGGCACCCAGGAGCAGTGA

Translation (451 aa):
MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLE
PRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSLEGFVLCHS
IAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTAL
NLIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQ
SVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIP
WGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQFDKLRKREAFMEQFRKEDIFKDNFDE
MDTSREIVQQLIDEYHAATRPDYISWGTQEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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