NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25322.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25322.1 Public Mus musculus 11 Epop 23 108 98 CCDS HistoryNCBI Gene:103551Re-query CCDS DB by CCDS ID:25322.1Re-query CCDS DB by GeneID:103551See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25322.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052281.5 ENSMUSP00000051211.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052281.5Link to Ensembl Protein Viewer:ENSMUSP00000051211.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000052281Re-query CCDS DB by Protein ID:ENSMUSP00000051211
Original member Current member NCBI NM_175332.3 NP_780541.2 Accepted alive Link to Nucleotide Sequence:NM_175332.3Link to Protein Sequence:NP_780541.2Re-query CCDS DB by Nucleotide ID:NM_175332Re-query CCDS DB by Protein ID:NP_780541Link to BLAST:NP_780541.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780541.2 369 Q7TNS8 369 100% 0 0

Chromosomal Locations for CCDS 25322.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 97628172 97629281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1110 nt):
ATGGAGACTCTGTGTCCTCCTCCCCGCCTGGCAGTGCCCGCTTCCCCGCGGGGGTCTCCCTGCTCGCCTA
CGCCCCTGAAGCCGCGTCGGGGGACCCCAGAGTTCTCCCCACTGTGCCTGCGTGCCCTCGCCTTCTGCGC
CCTTGCCAAACCCCGGCCGTCCTCCCTGGGCCTGGGGCCTGGAGAGCTGGCGCCGCGGACCCCGGTGCTG
CTGGGCCCCCCGGCCTCGCCATGCACAGGAGGCTGGGCCGCGGACGGCCTGAAGCACCTCGGGGGACAGG
CCGGGCGGCCGAGCGACGTGAGCTCCCCGGCCCGCGAGGATGCAGACGTCGCGGTGTGCCCAGGCGGTGG
AGAGGAGGAAGAGGGCGGAGGCGGCTTCCCGCACTTCGGCGCTGGTTCCTGCGCACCTCCGGGCCGCTGC
CCTGCTCCCCTGCGTCCTCAGGACTCTCCGACCAACCCCGCCTGGTCCCCGCCCAGGCCAGCCCGGGGTC
TTGATGCAGCTAGCAGTCCGCCCCTTGAGCCCGGCTCCCCGCCTCCGTCGCCACCTGCGGGCCTCTCCCC
GGAGCCTGCGCCTTCCGAGCAGCCTGTGCCGGCCTCCGAGGCTCCAGGGGGTGGAGACCCTGCGCCGACC
GCGCCTGAGGCACCCGCGCTCAGCCCCTCGACGGCAGACGCAGCACCGGACCCGCCCCGCGATCTCCGCC
AGGAACATTTCAACCGCCTGATCCGCCGCTCGAAACTTTGGTGTTACGCGAAGGGGTTCGCCCTGGACAC
TCCAAGTTTGCGCCGAGGGCCCGAACGGCCCGCGGCCAAAGCCCGTGGAGCAGCCAAGAAACGACGGCGG
CCAGCGCCGCCCCCGCCCAGTGTGCAGCCACGGCGGCCCGTCCCGACGCTTCCTACATCGAGCACCTTCA
GCCTCCTTGACTGCTTCCCCTGTCCCCCAGCTCTGGTGGTGGAAGAGAACGGAGACCTAGGGCCGGCTTC
CTCGCTTCGCCTCCAGGGAGACGCCAAGCCGCCGCCTGCCCACCCGCTGTGGAAGTGGCAGATGGGAGGA
CCCGCTGTCCCTGAGCCCCCGGGTCTCAAATCCTGGTGGGTCAACTTGGAAGAACTATGA

Translation (369 aa):
METLCPPPRLAVPASPRGSPCSPTPLKPRRGTPEFSPLCLRALAFCALAKPRPSSLGLGPGELAPRTPVL
LGPPASPCTGGWAADGLKHLGGQAGRPSDVSSPAREDADVAVCPGGGEEEEGGGGFPHFGAGSCAPPGRC
PAPLRPQDSPTNPAWSPPRPARGLDAASSPPLEPGSPPPSPPAGLSPEPAPSEQPVPASEAPGGGDPAPT
APEAPALSPSTADAAPDPPRDLRQEHFNRLIRRSKLWCYAKGFALDTPSLRRGPERPAAKARGAAKKRRR
PAPPPPSVQPRRPVPTLPTSSTFSLLDCFPCPPALVVEENGDLGPASSLRLQGDAKPPPAHPLWKWQMGG
PAVPEPPGLKSWWVNLEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH