NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25288.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25288.1 Public Mus musculus 11 Snf8 23 108 98 CCDS HistoryNCBI Gene:27681Re-query CCDS DB by CCDS ID:25288.1Re-query CCDS DB by GeneID:27681See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25288.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006217.9 ENSMUSP00000006217.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006217.9Link to Ensembl Protein Viewer:ENSMUSP00000006217.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000006217Re-query CCDS DB by Protein ID:ENSMUSP00000006217
Original member NCBI NM_033568.3 NP_291046.1 Updated not alive Link to Nucleotide Sequence:NM_033568.3Link to Protein Sequence:NP_291046.1Re-query CCDS DB by Nucleotide ID:NM_033568Re-query CCDS DB by Protein ID:NP_291046
Current member NCBI NM_033568.4 NP_291046.1 Accepted alive Link to Nucleotide Sequence:NM_033568.4Link to Protein Sequence:NP_291046.1Re-query CCDS DB by Nucleotide ID:NM_033568Re-query CCDS DB by Protein ID:NP_291046Link to BLAST:NP_291046.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_291046.1 258 Q9CZ28 258 100% 0 0

Chromosomal Locations for CCDS 25288.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 96035014 96035067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96035319 96035369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96039279 96039417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96041625 96041729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96043404 96043476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96045161 96045302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96046280 96046354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96047195 96047332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGCACCGGCGCGGGGTGGGAGCTGGCGCCATTGCCAAGAAGAAACTCGCAGAGGCCAAGTATAAGGAGC
GAGGGACTGTCCTGGCTGAGGACCAGCTGGCCCAGATGTCAAAACAGCTGGACATGTTCAAGACCAACCT
AGAAGAATTTGCCAGCAAGCACAAGCAAGAGATCCGGAAGAATCCTGAGTTCCGAGTCCAGTTCCAAGAC
ATGTGTGCAACCATTGGGGTGGATCCCCTGGCCTCTGGAAAAGGCTTTTGGTCTGAGATGCTGGGCGTTG
GGGACTTCTATTATGAACTGGGTGTCCAGATTATTGAAGTGTGCCTGGCCCTCAAACATCGGAATGGAGG
TCTGATAACTCTGGAGGAGCTACATCAGCAGGTGTTAAAAGGAAGGGGCAAGTTTGCTCAGGATGTCAGC
CAAGACGACCTGATCAGGGCCATCAAGAAGCTGAAAGCCCTGGGCACTGGATTCGGCATCATCCCTGTGG
GAGGCACTTACCTCATCCAGTCTGTTCCCGCTGAGCTCAATATGGATCACACTGTTGTGCTGCAGCTGGC
CGAGAAAAACGGGTATGTGACTGTCAGTGAAATCAAAACCAGTCTTAAATGGGAGACGGAGCGAGCACGG
CAAGTGCTGGAACACCTGCTGAAGGAAGGACTGGCCTGGCTGGATCTGCAGGCTCCAGGGGAGGCCCACT
ACTGGCTGCCAGCTCTTTTCACAGATCTCTACTCCCAGGAGATATCAGCTGAGGAGGCCAAAGAAGCCTT
CCCTTGA

Translation (258 aa):
MHRRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQD
MCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVS
QDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEIKTSLKWETERAR
QVLEHLLKEGLAWLDLQAPGEAHYWLPALFTDLYSQEISAEEAKEAFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH