NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25203.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25203.1 Public Mus musculus 11 Vmp1 23 108 98 CCDS HistoryNCBI Gene:75909Re-query CCDS DB by CCDS ID:25203.1Re-query CCDS DB by GeneID:75909See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25203.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018315.9 ENSMUSP00000018315.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018315.9Link to Ensembl Protein Viewer:ENSMUSP00000018315.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000018315Re-query CCDS DB by Protein ID:ENSMUSP00000018315
Original member NCBI NM_001356531.2 NP_001343460.1 Updated not alive Link to Nucleotide Sequence:NM_001356531.2Link to Protein Sequence:NP_001343460.1Re-query CCDS DB by Nucleotide ID:NM_001356531Re-query CCDS DB by Protein ID:NP_001343460
Current member NCBI NM_001356531.3 NP_001343460.1 Accepted alive Link to Nucleotide Sequence:NM_001356531.3Link to Protein Sequence:NP_001343460.1Re-query CCDS DB by Nucleotide ID:NM_001356531Re-query CCDS DB by Protein ID:NP_001343460Link to BLAST:NP_001343460.1
Original member NCBI NM_029478.5 NP_083754.2 Updated not alive Link to Nucleotide Sequence:NM_029478.5Link to Protein Sequence:NP_083754.2Re-query CCDS DB by Nucleotide ID:NM_029478Re-query CCDS DB by Protein ID:NP_083754
Current member NCBI NM_029478.6 NP_083754.2 Accepted alive Link to Nucleotide Sequence:NM_029478.6Link to Protein Sequence:NP_083754.2Re-query CCDS DB by Nucleotide ID:NM_029478Re-query CCDS DB by Protein ID:NP_083754Link to BLAST:NP_083754.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343460.1 406 Q99KU0 406 100% 0 0
NP_083754.2 406 Q99KU0 406 100% 0 0

Chromosomal Locations for CCDS 25203.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 86585308 86585451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86586496 86586598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86602008 86602069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86607176 86607292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86611342 86611422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86635175 86635306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86643498 86643665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86661123 86661233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86663483 86663573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86664654 86664789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86665777 86665852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGGCAGAGAATGGAAAAAATTGTGACCAGAGACGCATAGCAATGAGTAAGGATCAGCACAATGGAAGTC
TCACAGACCCCTCTTCAGTTCATGAGAAGAAGAGAAGGGATCGGGAAGAAAGACAGAATATTGTCCTGTG
GAGACAGCCACTCATTACCTTGCAGTATTTCTCTCTGGAAACTCTTGTAGTTTTGAAGGAATGGACCTCA
AAATTGTGGCATCGTCAAAGCATTGTGGTGTCCTTTTTACTGCTGCTTGCTGCGCTTGTAGCTACGTATT
ATGTGGAAGGAGCGCACCAACAGTATGTGCAGCGGATAGAGAAGCAGTTTCTTTTGTATGCATACTGGAT
AGGCCTGGGGATTTTGTCCTCTGTTGGTCTTGGAACAGGACTGCACACCTTTCTGCTTTATCTGGGCCCA
CATATAGCTTCAGTTACATTAGCTGCTTATGAATGCAATTCGGTGAATTTCCCTGAGCCACCCTATCCTG
ACCAGATTATCTGCCCAGAGGAAGAAGGCGCTGAGGGAGCCATTTCTTTGTGGAGTATCATCTCAAAAGT
TAGAATTGAAGCCTGCATGTGGGGCATTGGAACAGCCATTGGAGAGCTGCCTCCATATTTCATGGCCAGG
GCAGCTCGCCTCTCAGGTGCTGAACCAGATGATGAAGAGTATCAGGAATTTGAAGAAATGCTGGAACATG
CAGAGGCTGCACAAGACTTTGCATCACGGGCTAAACTGGCAGTTCAAAAACTAGTACAGAAAGTTGGATT
TTTTGGAATTTTGGCCTGTGCTTCTATTCCAAACCCCCTGTTTGACCTGGCTGGAATAACGTGTGGGCAC
TTCCTTGTACCTTTCTGGACCTTCTTTGGTGCAACCCTGATTGGGAAAGCAATCATTAAAATGCATATCC
AGAAAATATTTGTTATAGTAACTTTCAGCAAGCACATCGTGGAGCAGATGGTGACTTTCATTGGTGCTGT
CCCCGGCATAGGTCCGTCTCTGCAGAAGCCTTTTCAAGAGTACCTGGAGGCGCAGCGGCAGAAGCTTCAT
CACAGAAGTGAAGCGGGCACACCGCAGGGAGAAAACTGGTTATCCTGGATGTTTGAGAAGCTGGTGGTTG
CAATGGTGTGTTACTTTGTCCTGTCTATTATTAACTCCATGGCACAAAACTATGCCAAACGAATCCAGCA
GCGCTTGAACTCAGAGGAGAAAACTAAATAA

Translation (406 aa):
MAENGKNCDQRRIAMSKDQHNGSLTDPSSVHEKKRRDREERQNIVLWRQPLITLQYFSLETLVVLKEWTS
KLWHRQSIVVSFLLLLAALVATYYVEGAHQQYVQRIEKQFLLYAYWIGLGILSSVGLGTGLHTFLLYLGP
HIASVTLAAYECNSVNFPEPPYPDQIICPEEEGAEGAISLWSIISKVRIEACMWGIGTAIGELPPYFMAR
AARLSGAEPDDEEYQEFEEMLEHAEAAQDFASRAKLAVQKLVQKVGFFGILACASIPNPLFDLAGITCGH
FLVPFWTFFGATLIGKAIIKMHIQKIFVIVTFSKHIVEQMVTFIGAVPGIGPSLQKPFQEYLEAQRQKLH
HRSEAGTPQGENWLSWMFEKLVVAMVCYFVLSIINSMAQNYAKRIQQRLNSEEKTK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH