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Report for CCDS24978.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24978.1 Public Mus musculus 11 Pitpnm3 23 108 98 CCDS HistoryNCBI Gene:327958Re-query CCDS DB by CCDS ID:24978.1Re-query CCDS DB by GeneID:327958See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24978.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075258.12 ENSMUSP00000074737.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075258.12Link to Ensembl Protein Viewer:ENSMUSP00000074737.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000075258Re-query CCDS DB by Protein ID:ENSMUSP00000074737
Original member NCBI NM_001024927.2 NP_001020098.1 Updated not alive Link to Nucleotide Sequence:NM_001024927.2Link to Protein Sequence:NP_001020098.1Re-query CCDS DB by Nucleotide ID:NM_001024927Re-query CCDS DB by Protein ID:NP_001020098
Current member NCBI NM_001024927.3 NP_001020098.1 Accepted alive Link to Nucleotide Sequence:NM_001024927.3Link to Protein Sequence:NP_001020098.1Re-query CCDS DB by Nucleotide ID:NM_001024927Re-query CCDS DB by Protein ID:NP_001020098Link to BLAST:NP_001020098.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020098.1 974 Q3UHE1-1 974 100% 0 0

Chromosomal Locations for CCDS 24978.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 72051055 72051360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72051841 72051969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72056130 72056313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72058020 72058169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72058386 72058534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72058838 72058954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72061474 72061590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72063095 72063243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72064063 72064257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72065466 72065636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72067106 72067278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72070303 72070487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72070888 72071010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72071399 72071588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72074419 72074654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72074959 72075035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72092528 72092575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72112257 72112364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72120087 72120182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72135654 72135675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2925 nt):
ATGGCCAAGGCGGGCAGCGCAGGTGGCCCTTCCCCGGGTGGCGGTGCCCCCTGGCACCTTCGGAATGTCC
TCAGTGATTCGGTGGAGAGTTCAGATGATGAATTCTTTGATGCTAGAGAGGAGGTGGCTGAAGGAAAGAA
CGCCATCCTTATTGGAATGAGCCAGTGGAGCTCCAATGACCTGGTAGAGCAGATCGAGACCATAGGGAAG
CTGGATGAGCGTCAGGGAGACGGGGCCACAGCGTGCACATCCAGCATCCTGCAGGAGAAGCAGCGAGAAC
TGTACCGGGTGTCCCTCAGAAGGCAGAGGTTCCCAGCCCAAGGAAGTATCGAGATTCATGAAGATGGCGA
GGAAGGCTGCTCACAGCGCTCCTGCAAGACACACGTCCTTCTGCTGGTGCTGCATGGGGGCAACGTCCTG
GACACCGGCTCTGGTGACCCTTCCTGCAAGGCGGCCGACATTCACACTTTCAGCTCTGTGCTGGAGAAGG
TCATGCGCGCCCACTTCCCTGCTGCCCTGGGACACATCCTCATCAAGTTTGTCCCTTGTCCTGCCATCTG
CTCGGAGGCTTTCTCGCTCGTCTCTAACCTGAACCCCTATAGCCACGACGAGGGCTGCCTCGGTACCAGC
CAGGACCACGTGCCCCTGGCTGCCCTTCCCCTGCTGGCCATCTCCTCCCCACAGTACCAGGACGCTGTTG
CCACTGTCATCGAGCGAGCCAACCACATCTATGGCGAGTTCCTCAAGTCCTCTGATGGGATTGGCTTCAA
TGGGCAGGTGTGTCTCATCGGGGACTGTGTGGGCGGCCTCCTGGCTTTCGATGCTATCTGCTACAGTGCG
GGACCCTCAGGGGACAGCCCTGGCAGCAGCAGCCGGAAGGGGAGCATCAGCAGTACCCAGGACACCCCTG
TGGTGGTGGAAGAGGACTGCAGTCTGGCCAGCAGCAAGCGGCTCAGTAAGAGCAATGTCGATGTCTCCAG
TGGAGTGGAGGATGAGGACCCCAAGAGGCCGTTGCCTCGGAAACAGAGTGACTCCTCCACATATGACTGT
GAGGCGATCACCCAGCATCATGCCTTCCTCTCAAGCATCCACTCCAGTGTGCTGAAGGATGAGGCTGAGG
CTCCTGCAGCTGGCACCCCCCAGCTCTCTGAGGTCAGCCTGGGTCGCTTTGACTTTGATGTGTCTGACTT
CTTCCTCTTCGGCTCACCACTGGGCCTGGTCCTGGCCATGCGGAGGACAGTGCTGCCTGGGATAGATGGT
TTCCAGATGCGTCCTGCCTGTAGCCAGGTCTACAGCTTCTTCCACTGTGCAGATCCCTCTGCTTCACGGC
TTGAGCCACTGCTGGAGCCCAAGTTCCACCTGGTGCCTCCTGTCAGCGTGCCTCGCTACCAGAGGTTCCC
CCTGGGCGATGGACAGTCTCTCCTGCTCGCTGATGCCCTGCACACCCACAGCCCCCTATTCCTGGAGGGA
AGCTCCCGGGGAAGCCCCCCGCTTCTGGATGCCCCTGCCTCGCCCCCTCAGGCCCCAAGATTCCAGCGCA
CAGAACGGAGGCTAAGTAAAGGCAGCTCCCATAGCGACAGTTCAGAGTCCTCGGACAGCCTGGCGCCTAT
GGGTGCCTCCCGCATCACAGCCAAGTGGTGGGGAACCAAGAGGATTGACTATGCCCTGTACTGCCCAGAT
GTCCTCACCGCCTTCCCCACAGTGGCTCTGCCTCACCTCTTCCATGCCAGCTACTGGGAGTCTACCGATG
TGGTCGCCTTCATCTTGAGACAGGTGATGCGTTACGAGAGTGCAAGTGTGAAGGAGAGCACTGGTCTGGA
CCCCACAGCTCTGAGCCCTGCTAACCCCCGTGAGAAGTGGCTGCGTAAGCGAACCCAGGTCAAGTTGCGG
AACGTTACTGCGAACCACCGTGCCAATGATGTAATTGCTGCTGAGGATGGCCCCCAGGTCTTGGTGGGGC
GCTTCATGTATGGCCCTCTTGACATGGTAGCTCTGACTGGAGAGAAGGTGGACATCCTGGTGATGACAGA
GCCGTCGTCAGGCCGCTGGGTCCACCTGGACACAGAAATCACCAACAACAGTGGCAGAATCACATACAAT
GTGCCCCGGCCCCGACGTCTGGGGGTTGGTGTCTACCCTGTAAAGATGGTGGTCAGGGGTGACCAGACCT
GTGCGATGAGCTACCTCACGGTGCTGCCCCGAGGCATGGAGTGTGTTGTGTTCAGCATTGACGGGTCCTT
TGCCGCCAGTGTGTCTATCATGGGAAGTGACCCCAAGGTCCGGCCAGGTGCAGTGGATGTGGTTCGGCAC
TGGCAGGACCTGGGCTACATGATCCTTTACATCACGGGGCGGCCGGACATGCAGAAGCAGCGGGTGGTGT
CGTGGCTGTCCCAGCACAACTTCCCACAGGGCATGATCTTTTTCTCGGACGGACTGGTGCACGACCCACT
GAGGCAGAAGGCCATCTTCCTTCGCAACCTCATGCAGGAGTGTTTCATCAAAATCACTGCTGCCTATGGC
TCCACGAAAGATATCTCTGTCTACAGTGTGCTGGGCCTCCCTGCCTCCCAGATCTTCATTGTAGGCCGGT
CCACCAAGAAGTACCAAACCCAGTGCCAGTTCCTGAGCGAAGGCTACGCAGCACACCTGGCGGCACTAGA
AGCCAGCCACCGCTCTCGCCCCAAGAAGAACAACTCGCGCATGATCCTGCGCAAGGGCAGCTTTGGGCTG
CACGCGCAGCCAGAATTTCTGCGCAAGCGCAACCACCTGCGCAGGACCATGTCGGTGCAGCAGCCGGACC
CACCGGCCGCCAACCCCAAGCCCGAGCGGGCGCAGAGCCAGCCCGAGTCCGACAAGGACCACGAGCGGCC
GCTGCCCGCTCTCAGCTGGGCGCGTGGGCCCCCTAAGTTCGAGTCGGTGCCCTGA

Translation (974 aa):
MAKAGSAGGPSPGGGAPWHLRNVLSDSVESSDDEFFDAREEVAEGKNAILIGMSQWSSNDLVEQIETIGK
LDERQGDGATACTSSILQEKQRELYRVSLRRQRFPAQGSIEIHEDGEEGCSQRSCKTHVLLLVLHGGNVL
DTGSGDPSCKAADIHTFSSVLEKVMRAHFPAALGHILIKFVPCPAICSEAFSLVSNLNPYSHDEGCLGTS
QDHVPLAALPLLAISSPQYQDAVATVIERANHIYGEFLKSSDGIGFNGQVCLIGDCVGGLLAFDAICYSA
GPSGDSPGSSSRKGSISSTQDTPVVVEEDCSLASSKRLSKSNVDVSSGVEDEDPKRPLPRKQSDSSTYDC
EAITQHHAFLSSIHSSVLKDEAEAPAAGTPQLSEVSLGRFDFDVSDFFLFGSPLGLVLAMRRTVLPGIDG
FQMRPACSQVYSFFHCADPSASRLEPLLEPKFHLVPPVSVPRYQRFPLGDGQSLLLADALHTHSPLFLEG
SSRGSPPLLDAPASPPQAPRFQRTERRLSKGSSHSDSSESSDSLAPMGASRITAKWWGTKRIDYALYCPD
VLTAFPTVALPHLFHASYWESTDVVAFILRQVMRYESASVKESTGLDPTALSPANPREKWLRKRTQVKLR
NVTANHRANDVIAAEDGPQVLVGRFMYGPLDMVALTGEKVDILVMTEPSSGRWVHLDTEITNNSGRITYN
VPRPRRLGVGVYPVKMVVRGDQTCAMSYLTVLPRGMECVVFSIDGSFAASVSIMGSDPKVRPGAVDVVRH
WQDLGYMILYITGRPDMQKQRVVSWLSQHNFPQGMIFFSDGLVHDPLRQKAIFLRNLMQECFIKITAAYG
STKDISVYSVLGLPASQIFIVGRSTKKYQTQCQFLSEGYAAHLAALEASHRSRPKKNNSRMILRKGSFGL
HAQPEFLRKRNHLRRTMSVQQPDPPAANPKPERAQSQPESDKDHERPLPALSWARGPPKFESVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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