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Report for CCDS24163.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24163.1 Public Mus musculus 10 Syt1 23 108 98 CCDS HistoryNCBI Gene:20979Re-query CCDS DB by CCDS ID:24163.1Re-query CCDS DB by GeneID:20979See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24163.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064054.13 ENSMUSP00000063293.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064054.13Link to Ensembl Protein Viewer:ENSMUSP00000063293.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000064054Re-query CCDS DB by Protein ID:ENSMUSP00000063293
Original member Current member EBI ENSMUST00000105276.7 ENSMUSP00000100912.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105276.7Link to Ensembl Protein Viewer:ENSMUSP00000100912.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105276Re-query CCDS DB by Protein ID:ENSMUSP00000100912
Original member Current member NCBI NM_001252341.1 NP_001239270.1 Accepted alive Link to Nucleotide Sequence:NM_001252341.1Link to Protein Sequence:NP_001239270.1Re-query CCDS DB by Nucleotide ID:NM_001252341Re-query CCDS DB by Protein ID:NP_001239270Link to BLAST:NP_001239270.1
Original member Current member NCBI NM_001358502.1 NP_001345431.1 Accepted alive Link to Nucleotide Sequence:NM_001358502.1Link to Protein Sequence:NP_001345431.1Re-query CCDS DB by Nucleotide ID:NM_001358502Re-query CCDS DB by Protein ID:NP_001345431Link to BLAST:NP_001345431.1
Original member Current member NCBI NM_001358503.1 NP_001345432.1 Accepted alive Link to Nucleotide Sequence:NM_001358503.1Link to Protein Sequence:NP_001345432.1Re-query CCDS DB by Nucleotide ID:NM_001358503Re-query CCDS DB by Protein ID:NP_001345432Link to BLAST:NP_001345432.1
Original member Current member NCBI NM_009306.3 NP_033332.1 Accepted alive Link to Nucleotide Sequence:NM_009306.3Link to Protein Sequence:NP_033332.1Re-query CCDS DB by Nucleotide ID:NM_009306Re-query CCDS DB by Protein ID:NP_033332Link to BLAST:NP_033332.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239270.1 421 P46096 421 100% 0 0
NP_001345431.1 421 P46096 421 100% 0 0
NP_001345432.1 421 P46096 421 100% 0 0
NP_033332.1 421 P46096 421 100% 0 0

Chromosomal Locations for CCDS 24163.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 108500540 108500746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 108504397 108504530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 108583874 108583991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 108627253 108627420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 108631796 108631963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 108636551 108636673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 108642214 108642398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 108690884 108691046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGGTGAGTGCCAGTCGTCCTGAGGCCCTGGCTGCCCCTGTCACCACTGTTGCGACCCTTGTCCCACACA
AC
GCCACTGAGCCAGCCAGTCCTGGGGAAGGGAAGGAAGATGCCTTTTCCAAGCTGAAGCAGAAGTTTAT
G
AATGAACTGCATAAAATCCCATTGCCACCGTGGGCCTTAATTGCCATAGCCATAGTTGCGGTCCTTCTA
GTC
GTGACCTGCTGCTTCTGTGTCTGTAAGAAATGTTTGTTCAAAAAGAAAAACAAGAAGAAGGGAAAGG
AA
AAGGGAGGGAAGAACGCCATTAACATGAAAGACGTGAAAGACTTAGGGAAGACCATGAAGGATCAGGC
C
CTTAAGGATGACGATGCTGAAACTGGACTGACTGATGGAGAAGAAAAGGAGGAGCCCAAGGAAGAGGAG
AAA
CTGGGAAAGCTTCAATATTCACTGGACTATGACTTCCAGAATAACCAGCTGCTGGTGGGAATCATCC
AG
GCTGCTGAACTGCCCGCCCTGGACATGGGAGGCACATCTGATCCATACGTCAAAGTCTTCCTGCTGCC
C
GACAAAAAGAAGAAGTTTGAGACAAAAGTCCACCGGAAAACCCTCAATCCAGTCTTCAATGAACAGTTT
ACT
TTCAAGGTGCCATACTCGGAATTAGGTGGCAAGACACTGGTGATGGCTGTGTATGATTTTGACCGCT
TC
TCCAAGCACGACATCATTGGAGAGTTCAAAGTTCCTATGAACACCGTGGATTTTGGCCACGTCACCGA
G
GAGTGGCGCGATCTCCAGAGTGCTGAGAAAGAAGAGCAAGAGAAACTGGGTGACATCTGCTTCTCCCTC
CGC
TACGTCCCTACTGCCGGCAAGCTGACTGTTGTCATTCTGGAAGCCAAGAACCTGAAGAAGATGGATG
TG
GGTGGCTTATCTGATCCCTATGTAAAGATTCACCTGATGCAGAACGGCAAGAGACTGAAGAAGAAAAA
G
ACAACGATTAAGAAGAACACACTTAACCCCTACTACAATGAGTCCTTCAGCTTTGAAGTTCCGTTCGAG
CAA
ATCCAGAAAGTGCAAGTGGTGGTAACTGTTTTGGACTATGACAAGATTGGCAAGAACGACGCCATCG
GC
AAAGTCTTTGTGGGCTACAACAGCACCGGCGCAGAGCTGCGACACTGGTCAGACATGCTGGCCAACCC
C
CGGCGACCCATCGCCCAGTGGCACACTCTGCAGGTAGAGGAGGAGGTTGATGCCATGCTGGCTGTCAAG
AAG
TAA


Translation (421 aa):
MVSASRPEALAAPVTTVATLVPHNATEPASPGEGKEDAFSKLKQKFMNELHKIPLPPWALIAIAIVAVLL
V
VTCCFCVCKKCLFKKKNKKKGKEKGGKNAINMKDVKDLGKTMKDQ
ALKDDDAETGLTDGEEKEEPKEEE
K
LGKLQYSLDYDFQNNQ
LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQF
T
FK
VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSL
R
YVPTAGKLTVVILEAKNLKKMDVGGLS
DPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE
Q
IQ
KVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEEEVDAMLAVK
K




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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