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Report for CCDS24122.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24122.1 Public Mus musculus 10 Tmpo 23 108 98 CCDS HistoryNCBI Gene:21917Re-query CCDS DB by CCDS ID:24122.1Re-query CCDS DB by GeneID:21917See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24122.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020123.6 ENSMUSP00000020123.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020123.6Link to Ensembl Protein Viewer:ENSMUSP00000020123.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000020123Re-query CCDS DB by Protein ID:ENSMUSP00000020123
Original member NCBI NM_011605.3 NP_035735.2 Updated not alive Link to Nucleotide Sequence:NM_011605.3Link to Protein Sequence:NP_035735.2Re-query CCDS DB by Nucleotide ID:NM_011605Re-query CCDS DB by Protein ID:NP_035735
Current member NCBI NM_011605.4 NP_035735.2 Accepted alive Link to Nucleotide Sequence:NM_011605.4Link to Protein Sequence:NP_035735.2Re-query CCDS DB by Nucleotide ID:NM_011605Re-query CCDS DB by Protein ID:NP_035735Link to BLAST:NP_035735.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035735.2 693 Q61033-1 693 100% 0 0

Chromosomal Locations for CCDS 24122.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 91161842 91163361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91164043 91164201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91165943 91166069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 91171038 91171313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2082 nt):
ATGCCGGAGTTCCTAGAGGACCCTTCGGTCCTGACCAAAGACAAGTTGAAGAGCGAGTTGGTCGCCAACA
ACGTGACGCTCCCGGCCGGCGAGCAGCGCAAGGACGTGTACGTGCAGCTCTACCTGCAGCACCTCACGGC
GCGCAACCGGCCGCCGCTCGCCGCGGGAGCCAACAGCAAAGGGCCGCCCGACTTCTCGAGCGACGAGGAG
CGCGAGCCCACGCCGGTGCTCGGCTCCGGGGCCTCCGTGGGTCGCGGCCGCGGCGCCGTCGGCAGGAAAG
CCACAAAGAAAACTGATAAGCCCAGGCTAGAAGATAAAGATGATCTGGATGTGACAGAGCTCTCTAATGA
AGAACTTCTGGATCAGCTTGTAAGATATGGAGTGAATCCTGGTCCCATTGTGGGAACAACCAGGAAGCTA
TATGAGAAGAAGCTGTTGAAGCTGAGGGAGCAGGGAACTGAATCGAGATCCTCTACTCCTCTTCCAACAG
TCTCTTCCTCTGCAGAAAACACAAGGCAGAATGGAAGTAACGACTCTGACAGATACAGCGACAATGATGA
AGGAAAGAAGAAAGAACACAAGAAAGTGAAGTCCGCTAGGGATTGTGTTCCTTTTTCTGAACTTGCATCT
ACTCCCTCTGGTGCATTTTTTCAGGGTATTTCTTTCCCTGAAATCTCCACCCGTCCTCCTTTGGGCAGGA
CTGAACTGCAGGCAGCTAAGAAAGTACAAACCACTAAGAGAGACCCACCTAGGGAGACTTGTACTGATAC
GGCCTTGCCCGGGAAGGGGCAGACGCACAAGTTAGCCCCTGGACGGAGTTTATTTATTCCTTCAGAGTCT
AGCTATGATAGATGTGTAGAGAAAAGTTCTTCACCATCTTCTCAGCGTGAATTTGCTGCCAGGTTGGTCT
CTGCTGCAGCTTCTCCTTCACTGATAAGAGAAACCACTACTACTTACTCTAAGGACATAGTGGAAAATAT
TTGCCGTGGAGGGAAGAGTAGAGCTCAGCCATTGCGTGCTGAGGAGCCTGGCGTGTCAGATCAGTCAGTT
TTCTCTAGTGAAAGAGAAGTACTGCAGGAGTCGGAGAGGTCGCAGGTCATTTCTCCACCACTTGCTCAGG
CAATTCGAGATTATGTCAATTCTCTGTTAGTCCAGGGTGGGGTCGGCAGTTTGCCTGGGACTTCTGATTC
TGTGCCCACACTGGATGTAGAAAACATATGTAAGAGACTTAGCCAGTCCAGCTATCAAGATTCTGAATCC
CTGTCCCCTCCCCGAAAAGTCCCAAGACTCAGTGAGAAGCCAGCAAGGGGCGGGGACTCAGGCTCCTGTG
TGGCATTTCAGAATACACCTGGATCCGAACATAGGTCTTCTTTTGCCAAAAGTGTTGTCTCTCATTCTCT
GACTACTTTAGGAGTAGAAGTGTCTAAGCCACCACCACAGCATGATAAAATAGAAGCCTCAGAGCCGTCT
TTTCCTCTCCACGAATCTATCCTAAAAGTGGTGGAAGAGGAGTGGCAGCAAATTGATAGGCAGCTGCCCT
CGGTGGCGTGCAGATATCCAGTTTCCTCCATCGAGGCAGCACGGATATTATCAGTACCAAAAGTGGATGA
TGAAATCCTGGGGTTTATTTCTGAAGCCACCCCACGAGCAGCTACTCAGGCGTCCTCCACTGAGTCTTGT
GATAAACATTTGGACTTAGCTCTCTGTAGATCTTACGAAGCTGCAGCATCAGCATTGCAGATTGCAGCCC
ACACGGCCTTCGTAGCTAAGTCTCTGCAAGCTGACATAAGTCAGGCTGCACAGATTATTAATTCAGATCC
TAGTGATGCACAGCAGGCACTCAGGATTCTGAACAGAACCTATGATGCAGCTTCATATCTTTGTGATGCT
GCATTTGATGAAGTGAGGATGTCTGCCTGTGCCATGGGGTCTTCTACCATGGGTCGGCGTTATCTGTGGT
TGAAGGATTGTAAGATTAGTCCAGCTTCTAAGAATAAATTGACTGTTGCCCCCTTTAAAGGTGGAACATT
ATTTGGAGGGGAAGTACACAAAGTTATTAAAAAGCGTGGAAATAAGCAGTAA

Translation (693 aa):
MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLAAGANSKGPPDFSSDEE
REPTPVLGSGASVGRGRGAVGRKATKKTDKPRLEDKDDLDVTELSNEELLDQLVRYGVNPGPIVGTTRKL
YEKKLLKLREQGTESRSSTPLPTVSSSAENTRQNGSNDSDRYSDNDEGKKKEHKKVKSARDCVPFSELAS
TPSGAFFQGISFPEISTRPPLGRTELQAAKKVQTTKRDPPRETCTDTALPGKGQTHKLAPGRSLFIPSES
SYDRCVEKSSSPSSQREFAARLVSAAASPSLIRETTTTYSKDIVENICRGGKSRAQPLRAEEPGVSDQSV
FSSEREVLQESERSQVISPPLAQAIRDYVNSLLVQGGVGSLPGTSDSVPTLDVENICKRLSQSSYQDSES
LSPPRKVPRLSEKPARGGDSGSCVAFQNTPGSEHRSSFAKSVVSHSLTTLGVEVSKPPPQHDKIEASEPS
FPLHESILKVVEEEWQQIDRQLPSVACRYPVSSIEAARILSVPKVDDEILGFISEATPRAATQASSTESC
DKHLDLALCRSYEAAASALQIAAHTAFVAKSLQADISQAAQIINSDPSDAQQALRILNRTYDAASYLCDA
AFDEVRMSACAMGSSTMGRRYLWLKDCKISPASKNKLTVAPFKGGTLFGGEVHKVIKKRGNKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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