NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23820.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23820.1 Public Mus musculus 10 Mtres1 23 108 98 CCDS HistoryNCBI Gene:67851Re-query CCDS DB by CCDS ID:23820.1Re-query CCDS DB by GeneID:67851See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23820.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000147196.2 ENSMUSP00000119053.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000147196.2Link to Ensembl Protein Viewer:ENSMUSP00000119053.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000147196Re-query CCDS DB by Protein ID:ENSMUSP00000119053
Original member Current member NCBI NM_026411.2 NP_080687.1 Accepted alive Link to Nucleotide Sequence:NM_026411.2Link to Protein Sequence:NP_080687.1Re-query CCDS DB by Nucleotide ID:NM_026411Re-query CCDS DB by Protein ID:NP_080687Link to BLAST:NP_080687.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080687.1 240 Q9CQF4 240 100% 0 0

Chromosomal Locations for CCDS 23820.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 43525229 43525408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43530598 43530670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43532676 43533145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGGCCGTGCCTGGTGTCAGACTGCTCACAGGTGCTCTAAGGAAGCCAGATGCCTGGACCAGACTCTGGG
GTGTGATTCAGGGGACATCGTCACACAAACTTTGTGCTTCCTGGAACCGATACTTGTATTTTTCCAGTAC
CAAGTTAAACACATCAAATTATAAAACACTTTTCCGTAACATTTTCTCTCTGCGACTCCCAGAGCTTTTA
GTATCTCCAGAATGTTATTTTCCATTTTCTATACGACTCAAAAGCAATATAAACTCCAAAAAATCTACGA
AAAAGACCCTGCAAAAAGAGGCAGACGAAGAGGACTCCGACGAGGAGACCAGTTACCCCGAGAGGAGCGA
GCAGGAGGAGGAGCTTGAGAGTGAGCCTGGTGTGGCGAAGGACTACAAAGACCTGGAAAAGGTGGTGCAG
TCTTTCCGGTACGACGTCATCCTGAAGACGGGCCTTGACGTGGGGAGAAACAAAGTAGAAGATGCATTCT
ACAAAGGTGAACTCAGACTGAATGGGGAGAAGTTGTGGAAGAAAAGCAGAACGGTGAAGGTGGGAGATAC
CTTGGATCTCATCACTGGAGAGAACAAAGAGACAGGAACAGAGGTGGTGATGCGAATTCTCCTGAAAAAG
GTCTATGAAGAGAAGACTGAGAACGACAAGCACCGGGTGGTGTTGCGCCGATGGAAGAGCTTAAAGCTGC
CTAAAAAGACTCTGTCTAAATAA

Translation (240 aa):
MAVPGVRLLTGALRKPDAWTRLWGVIQGTSSHKLCASWNRYLYFSSTKLNTSNYKTLFRNIFSLRLPELL
VSPECYFPFSIRLKSNINSKKSTKKTLQKEADEEDSDEETSYPERSEQEEELESEPGVAKDYKDLEKVVQ
SFRYDVILKTGLDVGRNKVEDAFYKGELRLNGEKLWKKSRTVKVGDTLDLITGENKETGTEVVMRILLKK
VYEEKTENDKHRVVLRRWKSLKLPKKTLSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH