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Report for CCDS23566.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23566.1 Public Mus musculus 9 Ngp 23 108 98 CCDS HistoryNCBI Gene:18054Re-query CCDS DB by CCDS ID:23566.1Re-query CCDS DB by GeneID:18054See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23566.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035061.8 ENSMUSP00000035061.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035061.8Link to Ensembl Protein Viewer:ENSMUSP00000035061.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000035061Re-query CCDS DB by Protein ID:ENSMUSP00000035061
Original member Current member NCBI NM_008694.2 NP_032720.2 Accepted alive Link to Nucleotide Sequence:NM_008694.2Link to Protein Sequence:NP_032720.2Re-query CCDS DB by Nucleotide ID:NM_008694Re-query CCDS DB by Protein ID:NP_032720Link to BLAST:NP_032720.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032720.2 167 O08692 167 100% 0 0

Chromosomal Locations for CCDS 23566.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 110419862 110420038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110420813 110420914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110421696 110421782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110422272 110422409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (504 nt):
ATGGCAGGGCTGTGGAAGACCTTTGTATTGGTGGTGGCCTTGGCTGTGGTCTCCTGTGAGGCCCTTCGAC
AACTAAGATATGAGGAGATTGTTGATAGAGCCATAGAGGCATACAACCAAGGGCGGCAAGGAAGACCCCT
CTTCCGCCTGCTAAGTGCCACTCCGCCTTCTAGTCAGAATCCTGCTACCAATATCCCACTCCAGTTCAGG
ATTAAAGAGACAGAGTGTACTTCCACCCAGGAGAGACAGCCTAAAGACTGCGACTTCCTGGAGGATGGGG
AGGAGAGAAATTGCACAGGGAAATTCTTCAGAAGGCGGCAGTCAACCTCCCTGACCTTGACCTGCGACAG
GGATTGCAGTCGAGAGGATACCCAAGAAACCAGTTTTAATGATAAGCAAGACGTCTCTGAAAAGGAAAAG
TTCGAAGATGTGCCCCCTCACATCAGGAACATTTATGAAGATGCCAAGTATGATATCATCGGCAACATCC
TGAAAAATTTCTAG

Translation (167 aa):
MAGLWKTFVLVVALAVVSCEALRQLRYEEIVDRAIEAYNQGRQGRPLFRLLSATPPSSQNPATNIPLQFR
IKETECTSTQERQPKDCDFLEDGEERNCTGKFFRRRQSTSLTLTCDRDCSREDTQETSFNDKQDVSEKEK
FEDVPPHIRNIYEDAKYDIIGNILKNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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