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Report for CCDS23441.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23441.1 Public Mus musculus 9 Stag1 23 108 98 CCDS HistoryNCBI Gene:20842Re-query CCDS DB by CCDS ID:23441.1Re-query CCDS DB by GeneID:20842See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23441.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000129269.7 ENSMUSP00000116205.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000129269.7Link to Ensembl Protein Viewer:ENSMUSP00000116205.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000129269Re-query CCDS DB by Protein ID:ENSMUSP00000116205
Original member NCBI NM_009282.4 NP_033308.2 Updated not alive Link to Nucleotide Sequence:NM_009282.4Link to Protein Sequence:NP_033308.2Re-query CCDS DB by Nucleotide ID:NM_009282Re-query CCDS DB by Protein ID:NP_033308
Current member NCBI NM_009282.5 NP_033308.2 Accepted alive Link to Nucleotide Sequence:NM_009282.5Link to Protein Sequence:NP_033308.2Re-query CCDS DB by Nucleotide ID:NM_009282Re-query CCDS DB by Protein ID:NP_033308Link to BLAST:NP_033308.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033308.2 1258 Q9D3E6 1258 100% 0 0

Chromosomal Locations for CCDS 23441.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 100705226 100705254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100712438 100712540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100737978 100738142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100757690 100757786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100776756 100776832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100786492 100786696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100796704 100796855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100803281 100803354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100834418 100834541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100845016 100845114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100848659 100848738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100855797 100855904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100866100 100866214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100880776 100880893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100887380 100887483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100887830 100887922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100888022 100888111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100888246 100888449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100889561 100889631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100891049 100891136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100908637 100908717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100928023 100928115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100929841 100930015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100931587 100931726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100942638 100942739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100944769 100944917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100945856 100945984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100947082 100947287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100951607 100951781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100953486 100953596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100954221 100954335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100956369 100956449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100956535 100956558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3777 nt):
ATGATTACTTCAGAGTTACCAGTGTTACAGGATTCAACTAATGAAACTACTGCCCACTCTGATGCTGGCA
GCGAACTTGAAGAAACAGAGGTCAAAGGAAAAAGAAAAAGGGGTCGTCCTGGCCGGCCTCCATCAACAAA
TAAGAAACCTCGAAAATCTCCAGGAGAAAAGAGCAGAATTGAAGCTGGAATTCGAGGAGCAGGTCGTGGA
AGAGCCAATGGGCACCCCCAACAGAACGGCGACGGGGATCCTGTCACCTTATTTGAGGTGGTGAAGCTGG
GGAAGAGTGCAATGCAGTCCGTGGTGGATGACTGGATTGAATTATATAAACAAGACAGGGACATCGCACT
TCTGGATTTAATCAACTTTTTTATCCAGTGTTCAGGATGTCGAGGTACGGTCAGAATAGAGATGTTTCGA
AATATGCAGAACGCAGAAATAATCAGAAAAATGACTGAAGAATTTGATGAGGACAGTGGTGACTACCCCC
TTACAATGCCTGGTCCTCAGTGGAAAAAATTTCGTTCCAATTTTTGTGAATTTATTGGAGTCCTGATTCG
ACAGTGTCAATATAGCATAATTTATGATGAATATATGATGGACACCGTAATTTCCCTTTTGACTGGTTTG
TCAGACTCCCAAGTCAGAGCTTTTAGGCATACAAGTACCCTTGCTGCAATGAAGCTGATGACTGCTCTGG
TGAATGTTGCTTTAAACCTCAGTATTCATCAAGATAATACACAGAGGCAATATGAAGCTGAGAGAAATAA
AATGATTGGGAAGAGAGCCAATGAAAGACTGGAGTTACTACTTCAGAAACGTAAAGAGCTACAAGAAAAT
CAAGATGAAATTGAAAATATGATGAACTCTATCTTTAAGGGTATATTTGTTCATCGATACCGTGATGCAA
TTGCTGAAATTCGAGCCATCTGTATTGAAGAAATTGGAGTGTGGATGAAAATGTATAGCGATGCCTTCCT
AAATGACAGTTACTTGAAATATGTAGGATGGACTCTTCACGATAGGCAAGGGGAAGTCAGACTGAAGTGT
TTGAAAGCTCTACAAAGCCTGTATACCAATAGAGAATTATTCCCCAAATTGGAGCTATTTACAAATCGAT
TCAAGGATCGCATTGTATCAATGACTCTTGACAAAGAATATGATGTTGCTGTGGAAGCAATCCGATTGGT
TACTCTGATCCTTCATGGCAGTGAAGAAGCTCTTTCCAACGAAGACTGTGAAAATGTTTACCATTTGGTG
TATTCAGCACATCGCCCTGTTGCTGTGGCAGCTGGAGAGTTCCTACACAAAAAGCTGTTCAGCAGACATG
ACCCACAAGCAGAGGAAGCGTTAGCGAAGAGGAGAGGAAGGAACAGTCCAAACGGGAACCTCATTAGGAT
GCTTGTTCTTTTCTTTCTGGAAAGTGAGTTACATGAACATGCAGCCTACTTGGTGGACAGCTTGTGGGAG
AGCTCTCAAGAACTGTTGAAAGACTGGGAATGTATGACAGAGTTACTATTAGAAGAACCTGTTCAAGGAG
AAGAAGCAATGTCTGACCGTCAAGAGAGTGCTCTTATAGAGCTAATGGTCTGTACAATTCGTCAGGCAGC
TGAGGCACATCCTCCAGTGGGAAGGGGTACTGGCAAGAGAGTGCTAACAGCCAAAGAAAGGAAAACTCAA
ATTGATGATAGGAACAAATTAACTGAACATTTTATCATTACACTTCCTATGTTACTATCAAAGTATTCTG
CAGATGCTGAGAAGGTAGCAAACTTGCTGCAAATTCCACAGTATTTTGATCTAGAAATCTACAGCACAGG
TCGGATGGAAAAGCACCTGGATGCTTTATTAAAACAAATTAAGTTTGTTGTAGAGAAACATGTAGAATCA
GATGTCCTAGAAGCCTGCAGTAAAACCTACAGCATTTTATGCAGTGAAGAGTATACCATTCAGAATCGAG
TTGATATTGCTCGGAGCCAACTGATTGATGAATTTGTAGATCGATTCAATCATTCTGTAGAAGACCTGTT
GCAAGAGGGTGAAGAAGCTGACGATGATGATATCTACAATGTTCTTTCCACCTTAAAGCGTTTAACTTCT
TTTCACAATGCTCATGATCTCACTAAATGGGATCTATTTGGTAATTGCTACAGACTATTGAAGACTGGAA
TTGAACATGGAGCTATGCCAGAACAGATAGTCGTACAAGCACTGCAGTGTTCCCATTACTCAATTCTGTG
GCAGTTGGTGAAAATTACTGACGGATCTCCTTCCAAAGAGGATTTGTTGGTATTGAGGAAAACAGTGAAG
TCTTTTCTGGCTGTTTGCCAACAGTGCCTATCTAATGTTAATACTCCAGTTAAGGAACAGGCTTTCATGC
TGCTCTGTGATCTTTTAATGATTTTTAGCCACCAATTAATGACAGGTGGCAGAGAGGGCCTTCAGCCTTT
GGTGTTTAATCCAGATACTGGACTCCAGTCTGAACTCCTCAGTTTTGTGATGGATCATGTTTTCATTGAC
CAAGATGAGGAAAACCAAAGCATGGAGGGTGATGAGGAAGATGAAGCTAATAAAATTGAAGCCTTACATA
AAAGGAGGAACCTGCTTGCTGCCTTCAGCAAACTTATCATTTATGATATTGTTGACATGCACGCAGCTGC
AGACATCTTTAAACACTACATGAAGTATTACAATGACTATGGTGATATTATTAAGGAAACACTGAGTAAG
ACCAGGCAGATTGATAAAATTCAGTGTGCTAAGACTCTCATTCTCAGTCTGCAACAGTTGTTTAATGAAC
TTGTTCAAGAACAAGGTCCTAATCTGGATAGGACATCTGCCCACGTCAGTGGGATTAAAGAACTGGCACG
TCGTTTTGCCCTTACATTTGGATTGGACCAGATCAAGACCCGAGAAGCTGTTGCCACACTTCACAAGGAT
GGAATAGAGTTTGCCTTTAAATACCAGAATCAGAAAGGACAAGAATACCCACCCCCTAATCTGGCTTTTC
TAGAAGTACTAAGTGAATTTTCTTCTAAACTCCTTCGACAGGACAAGAAAACTGTTCATTCGTATCTTGA
AAAATTCCTCACCGAGCAGATGATGGAAAGGAGGGAGGATGTGTGGCTTCCACTCATCTCGTATAGAAAC
TCATTAGTCACTGGAGGTGAAGATGACAGGATGTCTGTGAACAGTGGAAGTAGCAGCAGTAAAACGTCCT
CAGTAAGGAGTAAGAAAGGAAGACCCCCACTGCACAGAAAACGAGTAGAAGATGAAAGTCTGGATAACAC
ATGGCTAAATAGGACTGACACGATGATTCAGACTCCTGGACCCTTGCCAACCCCACAGCTCACCTCCACG
GTACTTAGAGAAAACAGCCGTCCCATGGGAGAGCAGATTCAGGAACCTGAGTCTGAGCATGGCTCTGAAC
CAGACTTTTTACATAATCCCCAGATGCAGATCTCTTGGTTAGGCCAGCCGAAGTTAGAAGACTTGAATCG
GAAGGACAGAACAGGGATGAACTACATGAAAGTAAGAGCTGGAGTCCGGCACGCCGTTCGGGGTCTAATG
GAGGAAGATGCTGAGCCCATCTTTGAAGATGTGATGATGTCATCACGGAGCCAGTTAGAAGACATGAATG
AAGAATTTGAAGACACCATGGTTATTGATTTGCCCCCATCAAGAAATCGCCGAGAGAGAGCTGAGCTAAG
GCCAGACTTCTTTGACTCTGCAGCTATCATAGAAGATGATTCAGGATTTGGAATGCCTATGTTCTGA

Translation (1258 aa):
MITSELPVLQDSTNETTAHSDAGSELEETEVKGKRKRGRPGRPPSTNKKPRKSPGEKSRIEAGIRGAGRG
RANGHPQQNGDGDPVTLFEVVKLGKSAMQSVVDDWIELYKQDRDIALLDLINFFIQCSGCRGTVRIEMFR
NMQNAEIIRKMTEEFDEDSGDYPLTMPGPQWKKFRSNFCEFIGVLIRQCQYSIIYDEYMMDTVISLLTGL
SDSQVRAFRHTSTLAAMKLMTALVNVALNLSIHQDNTQRQYEAERNKMIGKRANERLELLLQKRKELQEN
QDEIENMMNSIFKGIFVHRYRDAIAEIRAICIEEIGVWMKMYSDAFLNDSYLKYVGWTLHDRQGEVRLKC
LKALQSLYTNRELFPKLELFTNRFKDRIVSMTLDKEYDVAVEAIRLVTLILHGSEEALSNEDCENVYHLV
YSAHRPVAVAAGEFLHKKLFSRHDPQAEEALAKRRGRNSPNGNLIRMLVLFFLESELHEHAAYLVDSLWE
SSQELLKDWECMTELLLEEPVQGEEAMSDRQESALIELMVCTIRQAAEAHPPVGRGTGKRVLTAKERKTQ
IDDRNKLTEHFIITLPMLLSKYSADAEKVANLLQIPQYFDLEIYSTGRMEKHLDALLKQIKFVVEKHVES
DVLEACSKTYSILCSEEYTIQNRVDIARSQLIDEFVDRFNHSVEDLLQEGEEADDDDIYNVLSTLKRLTS
FHNAHDLTKWDLFGNCYRLLKTGIEHGAMPEQIVVQALQCSHYSILWQLVKITDGSPSKEDLLVLRKTVK
SFLAVCQQCLSNVNTPVKEQAFMLLCDLLMIFSHQLMTGGREGLQPLVFNPDTGLQSELLSFVMDHVFID
QDEENQSMEGDEEDEANKIEALHKRRNLLAAFSKLIIYDIVDMHAAADIFKHYMKYYNDYGDIIKETLSK
TRQIDKIQCAKTLILSLQQLFNELVQEQGPNLDRTSAHVSGIKELARRFALTFGLDQIKTREAVATLHKD
GIEFAFKYQNQKGQEYPPPNLAFLEVLSEFSSKLLRQDKKTVHSYLEKFLTEQMMERREDVWLPLISYRN
SLVTGGEDDRMSVNSGSSSSKTSSVRSKKGRPPLHRKRVEDESLDNTWLNRTDTMIQTPGPLPTPQLTST
VLRENSRPMGEQIQEPESEHGSEPDFLHNPQMQISWLGQPKLEDLNRKDRTGMNYMKVRAGVRHAVRGLM
EEDAEPIFEDVMMSSRSQLEDMNEEFEDTMVIDLPPSRNRRERAELRPDFFDSAAIIEDDSGFGMPMF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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