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Report for CCDS23389.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23389.1 Public Mus musculus 9 Trim43a 23 108 98 CCDS HistoryNCBI Gene:547109Re-query CCDS DB by CCDS ID:23389.1Re-query CCDS DB by GeneID:547109See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23389.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164661.3 ENSMUSP00000127527.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164661.3Link to Ensembl Protein Viewer:ENSMUSP00000127527.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000164661Re-query CCDS DB by Protein ID:ENSMUSP00000127527
Original member Current member NCBI NM_001034906.3 NP_001030078.1 Accepted alive Link to Nucleotide Sequence:NM_001034906.3Link to Protein Sequence:NP_001030078.1Re-query CCDS DB by Nucleotide ID:NM_001034906Re-query CCDS DB by Protein ID:NP_001030078Link to BLAST:NP_001030078.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001030078.1 445 Q3TL54 445 100% 0 0

Chromosomal Locations for CCDS 23389.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 88582038 88582448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88583033 88583128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88584135 88584365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88585397 88585419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88586089 88586189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88588005 88588480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGGAATCAGACAATTTACAAGACCCTCAGGAGGAAACACTCACCTGCTCCATCTGCCAGAGTATCTTTA
TGAATCCAGTTTATTTAAGGTGTGGCCATAAGTTCTGCGAGGCATGTCTCTTACTTTCTCAAGAAGACAT
CAAATTTCCTGCCTACTGCCCCATGTGTATGCAACCATTTAACCAGGAATATATAAATGACATTTCTCTG
AAGAAGCAGGTGTCCATTGTCAGAAAGAAAAGGCTCATGAAATATTTGAATTCTAAGGAGCACAAGTGTG
TGACCCACAAGGCAAAAAAGATGATCTTCTGTGATAAGAGCAAGATCCTCCTCTGTCACCTGTGTTCTGA
CTCCCAGGAGCACAGTGGTCACACACACTGTTCCATTGATGTAGCTGTTCAGGAGAAAATGGAGGAACTT
CTAAAGCACATGGACTCATTATGGCGGAGGCTCAAAATCCAGCAGAATTATGTAGAAATAGAGAGGAGAA
CGACCTTGTGGTGGTTGTCCGTGAAGCTACGGGAGGAAGTGATCAAGAGAGTGTATGGAAAACAATGTCC
ACCCCTCTGTGAAGAAAGGGATCAACACATAGAGTGTTTGAGACATCAAAGCAACACTACTTTAGAGGAG
CTCAGGAAAAGTGAAGCTACGATAGTCCACGAGAGAAATCAACTAATAGAGGTTTATCGGGAGCTGATGA
CAATGTCCCAGAGGCCATACCAGGAGCTGCTGGTGCAGGACTTGGATGACTTGTTCAGAAGGAGTAAGCT
AGCGGCAAAGCTGGACATGCCACAGGGTATGATACCAAGACTCCATGCCCATTCCATTCCTGGGCTGACT
GCAAGGCTCAACTCCTTCCGAGTGAAGATTTCCTTTAAACATTCAATCATGTTCGGCTACACCTCAGTCA
GACCTTTTGATATCAGACTTCTCCATGAAAGCACATCTCTGGATTCAGCTGAAACCCATCGTGTTTCCTG
GGGAAAAAAGAGCTTCTCCAGGGGAAAATACTACTGGGAGGTGGATTTGAAGGACCATGAGCAGTGGACT
GTAGGAGTCCGTAAGGATCCCTGGTTAAGGGGGAGAAGCTATGCGGCGACACCCACAGATCTATTTCTTC
TTGAGTGTTTGAGAAAGGAAGATCATTACATTCTCATCACCCGCATAGGAGGTGAACACTATATAGAGAA
GCCAGTTGGCCAAGTTGGCGTGTTCCTTGATTGTGAGGGTGGATATGTAAGTTTCGTGGATGTAGCCAAG
AGTTCCCTCATACTCAGCTACTCTCCTGGAACTTTCCATTGTGCTGTCAGGCCTTTCTTCTCTGCTGTCT
ACACATAA

Translation (445 aa):
MESDNLQDPQEETLTCSICQSIFMNPVYLRCGHKFCEACLLLSQEDIKFPAYCPMCMQPFNQEYINDISL
KKQVSIVRKKRLMKYLNSKEHKCVTHKAKKMIFCDKSKILLCHLCSDSQEHSGHTHCSIDVAVQEKMEEL
LKHMDSLWRRLKIQQNYVEIERRTTLWWLSVKLREEVIKRVYGKQCPPLCEERDQHIECLRHQSNTTLEE
LRKSEATIVHERNQLIEVYRELMTMSQRPYQELLVQDLDDLFRRSKLAAKLDMPQGMIPRLHAHSIPGLT
ARLNSFRVKISFKHSIMFGYTSVRPFDIRLLHESTSLDSAETHRVSWGKKSFSRGKYYWEVDLKDHEQWT
VGVRKDPWLRGRSYAATPTDLFLLECLRKEDHYILITRIGGEHYIEKPVGQVGVFLDCEGGYVSFVDVAK
SSLILSYSPGTFHCAVRPFFSAVYT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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