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Report for CCDS23115.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23115.1 Public Mus musculus 9 Cxcr5 23 108 98 CCDS HistoryNCBI Gene:12145Re-query CCDS DB by CCDS ID:23115.1Re-query CCDS DB by GeneID:12145See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23115.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062215.7 ENSMUSP00000050444.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062215.7Link to Ensembl Protein Viewer:ENSMUSP00000050444.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000062215Re-query CCDS DB by Protein ID:ENSMUSP00000050444
Original member Current member EBI ENSMUST00000179828.7 ENSMUSP00000137518.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179828.7Link to Ensembl Protein Viewer:ENSMUSP00000137518.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179828Re-query CCDS DB by Protein ID:ENSMUSP00000137518
Original member Current member EBI ENSMUST00000215293.1 ENSMUSP00000149508.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215293.1Link to Ensembl Protein Viewer:ENSMUSP00000149508.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215293Re-query CCDS DB by Protein ID:ENSMUSP00000149508
Original member Current member NCBI NM_007551.3 NP_031577.2 Accepted alive Link to Nucleotide Sequence:NM_007551.3Link to Protein Sequence:NP_031577.2Re-query CCDS DB by Nucleotide ID:NM_007551Re-query CCDS DB by Protein ID:NP_031577Link to BLAST:NP_031577.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031577.2 374 Q04683 374 100% 0 0

Chromosomal Locations for CCDS 23115.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 44513234 44514301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 44526322 44526378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGAACTACCCACTAACCCTGGACATGGGCTCCATCACATACAATATGGATGACCTGTACAAGGAACTGG
CCTTCTACAGTAACAGCACGGAGATTCCCCTACAGGACAGTAACTTCTGCTCTACAGTCGAGGGACCCTT
ACTGACGTCCTTTAAGGCGGTATTCATGCCTGTGGCCTACAGCCTCATCTTCCTCCTGGGTATGATGGGA
AACATCCTGGTGCTGGTAATCCTGGAGAGGCACCGGCACACGCGGAGCTCAACCGAGACCTTCCTGTTCC
ACCTCGCAGTAGCCGACCTTCTCTTAGTCTTCATCCTGCCTTTTGCAGTGGCTGAGGGCTCTGTGGGTTG
GGTCCTAGGGACCTTCCTCTGCAAAACTGTGATCGCTCTGCACAAGATCAATTTCTACTGCAGCAGCCTG
CTGCTGGCCTGTATAGCTGTAGACCGGTACCTAGCCATCGTCCATGCTGTTCACGCCTACCGCCGCCGTC
GACTCCTCTCCATCCACATCACCTGCACGGCCATTTGGCTGGCCGGCTTCCTGTTCGCCTTACCGGAACT
CCTCTTTGCCAAGGTTGGCCAACCTCATAACAACGACTCCTTACCACAGTGCACCTTCTCCCAGGAAAAC
GAAGCGGAAACTAGAGCCTGGTTCACCTCCCGTTTCCTCTACCACATCGGGGGCTTCCTACTACCGATGC
TTGTGATGGGATGGTGTTACGTGGGCGTGGTCCACAGGCTACTGCAGGCCCAGCGGCGCCCTCAGCGGCA
GAAGGCGGTCAGGGTGGCCATTTTAGTGACAAGCATTTTCTTCCTCTGCTGGTCGCCCTACCACATTGTC
ATCTTCCTAGATACACTGGAGAGGCTGAAGGCTGTGAATAGCAGCTGCGAGCTGAGTGGCTATCTCTCTG
TGGCCATCACCTTGTGTGAATTCCTGGGCCTGGCACACTGCTGTCTCAATCCCATGCTCTACACCTTCGC
TGGCGTAAAGTTCCGCAGTGACCTCTCTCGGCTTCTGACCAAGCTGGGCTGTGCTGGCCCGGCCTCCCTT
TGCCAACTTTTCCCCAACTGGCGCAAGAGTAGTCTCTCTGAGTCAGAGAATGCTACTTCCCTCACCACCT
TCTAG

Translation (374 aa):
MNYPLTLDMGSITYNMDDLYKELAFYSNSTEIPLQDSNFCSTVEGPLLTSFKAVFMPVAYSLIFLLGMMG
NILVLVILERHRHTRSSTETFLFHLAVADLLLVFILPFAVAEGSVGWVLGTFLCKTVIALHKINFYCSSL
LLACIAVDRYLAIVHAVHAYRRRRLLSIHITCTAIWLAGFLFALPELLFAKVGQPHNNDSLPQCTFSQEN
EAETRAWFTSRFLYHIGGFLLPMLVMGWCYVGVVHRLLQAQRRPQRQKAVRVAILVTSIFFLCWSPYHIV
IFLDTLERLKAVNSSCELSGYLSVAITLCEFLGLAHCCLNPMLYTFAGVKFRSDLSRLLTKLGCAGPASL
CQLFPNWRKSSLSESENATSLTTF


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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