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Report for CCDS23079.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23079.1 Public Mus musculus 9 Zfp202 23 108 98 CCDS HistoryNCBI Gene:80902Re-query CCDS DB by CCDS ID:23079.1Re-query CCDS DB by GeneID:80902See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23079.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026693.13 ENSMUSP00000026693.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026693.13Link to Ensembl Protein Viewer:ENSMUSP00000026693.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026693Re-query CCDS DB by Protein ID:ENSMUSP00000026693
Original member Current member NCBI NM_030713.2 NP_109638.2 Accepted alive Link to Nucleotide Sequence:NM_030713.2Link to Protein Sequence:NP_109638.2Re-query CCDS DB by Nucleotide ID:NM_030713Re-query CCDS DB by Protein ID:NP_109638Link to BLAST:NP_109638.2

Chromosomal Locations for CCDS 23079.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 40207293 40207694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 40208305 40208515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 40208878 40208966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 40209767 40209896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 40210441 40210560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 40210896 40211869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1926 nt):
ATGGCAACAGCCTTGGAGCCAGAGGACCAAGATCTTTGGGAAGAAGAAGGAGTTCTGATGGTGAAACTGG
AGGATGATTTCACGTGCGGGCCAGAATCCGCCTTGGAGGGCGATGATCCTGTACTGGAGACCTCTCACCA
GAACTTCCGACGCTTTCGATACCAGGAAGCATCAAGCCCTCGAGAAGCTCTCATCAGACTTCGAGAGCTT
TGTCATCAGTGGCTGAGGCCAGAGAGGAGAACTAAGGAGCAGATTCTTGAGCTGCTCGTGTTGGAGCAGT
TCCTCACTGTCCTGCCTGGAGAACTGCAGAGCTGGGTGCGAGGCCAGCGGCCCGAGAGTGGCGAGGAGGC
AGTGACGCTGGTGGAGGGTTTGCAGAAACAACCCAGGAGACCAAGGCGGTGGGTAACCGTCCATGTTCAG
GGCCAGGAAGTCCTGTCAGAGGAGACCCTACACCTAGGGCTGGAGCCGGAGTCCTCCAGTGAGCAACAAG
ATCCAACACAGACCTTGACCACTGAGCAGCCCCATGAGGAAGCCCTCCGAAGCCCAGATCTGGGGACACA
GGAACAGGAGACCTTGCAGCATGACGAGGAGCACCTGCCCCTGCCGGAATGTGAGGTTCCAGTGTCCCAG
GATGTAGACCTTCCCACAGAACAAGGGTCTGGACACCCAGAGATGGTTGCTCTTCTCACTGCTCTCTCTC
AGGGACTGGTCACATTCAAGGATGTGGCTCTGTGCTTCTCACAGGATCAGTGGAGTGATCTGGATCCAAC
ACAAAAAGAATTCTATGGAGAGTATGTCTTGGAAGAAGACTGTGGAATTGTGGTCTCTCTGTCATTTCCA
ATTCCCAGACTAGATGATACCTCCCAGATTAGAGAAGAAGAGCCTCAGGTCCCAGGTGTCCATGAGTCTC
AAGAGCCTGCAGAACCAGAAATCCTGAGTTTTACCTATACAGGAGACATGAGTGAAGCTGAGGAAGAAAG
TGTTGAGCAACAAGATACACACAAGTCTACTTTGGCAAACACAGAAGTTCACCAGTCTCCAGATTGGGAA
ATAGTCATTGAGGATAATACCAGTAGACTTAATGAAAGATTTGGTACAAACGTTTCTAAAGTTAATAGTT
TCACAAATATTAGGGAAACTATGCCTGTTCACTCCCAATCAGGGAGGCAGCATCATTGCCCTCTATGTGC
AAAAAGCTTCACGTGTAATTCTCATCTTATTAGGCACTTAAGAACTCACACAGGAGAAAAACCCTATAAA
TGTATGGAGTGTGGGAAAAGTTACACACGGAGCTCACATCTAGCTAGGCACCAGAAAGTCCATAAGATGA
ACACTCCTCATAAACATCCTCCAAACCGGAAGACTGTGGATGGCCCTCTGGTCCAGTCTGAGGTAACTAC
CCGTGTGGAGAAACCATATACCTGTGATGATTGTGGAAAACATTTCCGTTGGACGTCGGACCTGGTCAGG
CACCAGAGGACACATACAGGAGAAAAACCTTTTTTCTGTACTATCTGTAGCAAAAGCTTCAGCCAGAAAT
CTGTGTTAACGACACACCAAAGAATCCATGTTGGAGGCAAGCCCTACGTGTGTGCGAACTGTGGCGAGAA
CTTCAGTGAGCAGAAGCAGTATCTGACACACCGCAAGACACACGTGTCTGAGGAGCACCATCTGTGCAAT
GAGTGTGGCCGCTCCTTCAGCCATAGTGCAGCATTTGCCAAGCACCTGAAAGGCCATGCTTCAGTGAGGA
ACTGCCGCTGCGATGAGTGTGGTAAAACCTTTAGCAGGAGGGATCACCTTGTCAGACATCAACGAACACA
CACTGGGGAAAAGCCTTTTACCTGTGCCACCTGTGGGAAAAGCTTCAGCAGAGGCTATCACTTAATCCGG
CATCAGAGAGTCCACACAGGAAAGACCAAGACCTAG

Translation (641 aa):
MATALEPEDQDLWEEEGVLMVKLEDDFTCGPESALEGDDPVLETSHQNFRRFRYQEASSPREALIRLREL
CHQWLRPERRTKEQILELLVLEQFLTVLPGELQSWVRGQRPESGEEAVTLVEGLQKQPRRPRRWVTVHVQ
GQEVLSEETLHLGLEPESSSEQQDPTQTLTTEQPHEEALRSPDLGTQEQETLQHDEEHLPLPECEVPVSQ
DVDLPTEQGSGHPEMVALLTALSQGLVTFKDVALCFSQDQWSDLDPTQKEFYGEYVLEEDCGIVVSLSFP
IPRLDDTSQIREEEPQVPGVHESQEPAEPEILSFTYTGDMSEAEEESVEQQDTHKSTLANTEVHQSPDWE
IVIEDNTSRLNERFGTNVSKVNSFTNIRETMPVHSQSGRQHHCPLCAKSFTCNSHLIRHLRTHTGEKPYK
CMECGKSYTRSSHLARHQKVHKMNTPHKHPPNRKTVDGPLVQSEVTTRVEKPYTCDDCGKHFRWTSDLVR
HQRTHTGEKPFFCTICSKSFSQKSVLTTHQRIHVGGKPYVCANCGENFSEQKQYLTHRKTHVSEEHHLCN
ECGRSFSHSAAFAKHLKGHASVRNCRCDECGKTFSRRDHLVRHQRTHTGEKPFTCATCGKSFSRGYHLIR
HQRVHTGKTKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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