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Report for CCDS22980.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22980.1 Public Mus musculus 9 Vsig2 23 108 98 CCDS HistoryNCBI Gene:57276Re-query CCDS DB by CCDS ID:22980.1Re-query CCDS DB by GeneID:57276See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22980.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002008.6 ENSMUSP00000002008.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002008.6Link to Ensembl Protein Viewer:ENSMUSP00000002008.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000002008Re-query CCDS DB by Protein ID:ENSMUSP00000002008
Original member Current member NCBI NM_020518.2 NP_065264.2 Accepted alive Link to Nucleotide Sequence:NM_020518.2Link to Protein Sequence:NP_065264.2Re-query CCDS DB by Nucleotide ID:NM_020518Re-query CCDS DB by Protein ID:NP_065264Link to BLAST:NP_065264.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065264.2 328 Q9Z109-1 328 100% 0 0

Chromosomal Locations for CCDS 22980.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 37539375 37539438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37539869 37540026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37540294 37540501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37541327 37541485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37542355 37542474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37542589 37542733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37544010 37544142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGGCCTGGCCCCTGGTGGGGGCTTTCCTTTGCGGGCACTTGCTGGGCTTCGTGTGCCTGAGCGGGCTAG
CTGTGGAGGTGACTGTGCCCACTGAGCCACTGAGCGTGCCAAAGGGTAAGACGGCCGAGCTGAGCTGCAG
TTACAAAACATCGGTGGGCGACAACTTTGCCTTGGAGTGGAGCTTTGTGCAGCCTGGGAAGCCCATCTCT
GCGTCCGTGCCCGTTCTGTACTTCACCAATGGCCACCTGTATCCCACTGGCTCTAAAGCAGATCGGGCCA
TCCTTCTCCACGATCCACCCACAGGAGGACTGGCTACCCTGAAACTGACTGACCTCCGCCCTTCAGACAC
TGGGACCTACCTCTGCAATGTTAACAACCCACCAGATTTCTACACCAACGGGTTGGGGTTAATCAACCTT
ACTGTGCTGGTGCCCCCCAGTCACCCCTTATGCAGCCAGAGTGGGCAAACCTCTGTGGGAGGTTCTGCTG
CACTGGGATGCCGCTCCTCTGAGGGAGCACCCAAGCCAGTGTACAACTGGGAACGTCTCGGATCTTCTCC
TACACCTCCTCCTGGTAGCATGGTTCAAGATGAAGTGTCCGGCCAGCTCATTCTTACCAATCTCTCCCTG
ACCTCCTCTGGCACCTACCGATGTGTGGCCAGCAACCAGATGGGCAGTGCCTCCTGTGAGCTGAACCTCT
CCGTGACTGACTCATCTGAAGGCCGAGTAGCTGGGACTCTTATTGGGGTGCTGCTGGGAGTGCTGCTCCT
GTCAGTCGCCGCATTCTGCCTCATCAGGTTCCAGAAAGAGAGGAAAAAGGAGCCCAAGGAGACCTATGGG
GGTAGTGACCTTCGGGAGGATGCAACCGCTCCTGGGGTTTTTGAGCAAGCTTCTATGAGAGCCGATCATA
GCAAAGAGCTCCTGGAGAAGTCTCCATGTGCCAGCACCATGACCACCACTAAGTCCAAACTCTCTATGGT
TGTCTGA

Translation (328 aa):
MAWPLVGAFLCGHLLGFVCLSGLAVEVTVPTEPLSVPKGKTAELSCSYKTSVGDNFALEWSFVQPGKPIS
ASVPVLYFTNGHLYPTGSKADRAILLHDPPTGGLATLKLTDLRPSDTGTYLCNVNNPPDFYTNGLGLINL
TVLVPPSHPLCSQSGQTSVGGSAALGCRSSEGAPKPVYNWERLGSSPTPPPGSMVQDEVSGQLILTNLSL
TSSGTYRCVASNQMGSASCELNLSVTDSSEGRVAGTLIGVLLGVLLLSVAAFCLIRFQKERKKEPKETYG
GSDLREDATAPGVFEQASMRADHSKELLEKSPCASTMTTTKSKLSMVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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