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Report for CCDS22978.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22978.1 Public Mus musculus 9 Msantd2 23 108 98 CCDS HistoryNCBI Gene:235184Re-query CCDS DB by CCDS ID:22978.1Re-query CCDS DB by GeneID:235184See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22978.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048604.7 ENSMUSP00000043329.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048604.7Link to Ensembl Protein Viewer:ENSMUSP00000043329.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000048604Re-query CCDS DB by Protein ID:ENSMUSP00000043329
Original member NCBI NM_146222.2 NP_666334.2 Updated not alive Link to Nucleotide Sequence:NM_146222.2Link to Protein Sequence:NP_666334.2Re-query CCDS DB by Nucleotide ID:NM_146222Re-query CCDS DB by Protein ID:NP_666334
Current member NCBI NM_146222.3 NP_666334.2 Accepted alive Link to Nucleotide Sequence:NM_146222.3Link to Protein Sequence:NP_666334.2Re-query CCDS DB by Nucleotide ID:NM_146222Re-query CCDS DB by Protein ID:NP_666334Link to BLAST:NP_666334.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666334.2 559 Q6NZR2-1 559 100% 0 0

Chromosomal Locations for CCDS 22978.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 37489324 37489833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37517217 37517472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37518727 37518787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37522690 37523542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGGCTGCGCCCTGTGGCTCGGAGCTGCCCGCCAACTCGCCGCTCAAAATTCCGAAGATGGAGGTGCTTT
CCCCGGCGTCTCCCGGCGACCTGAGCGACGGGAACCCATCGCTGTCCGACCCTTCCACGCCTCGGGGAGC
CTCCCCTCTCGGGCCCGGCAGCGCGGCGGGCTCGGGGGCCGCGGCGTCCGGGGGTCTCGGGCTGGGGCTG
GGGGGCCGCGGCGCTGCCTCGTCCTCGGTCTCCTTCTCGCCCGGCGGCGGCAGTGGCGGGGCTGCGGCGG
CCGCTGCCGCCGCCTGCCGGGGTATGTCGTGGACGCCGGCAGAGACGAACGCGCTCATCGCTGTATGGGG
CAACGAGCGGCTGGTGGAGGCGCGGTACCAGCAGCTGGAGGGAGCCGGCACGGTATTCGGCAGCAAGGCC
CCTGGGCCGGCCATGTACGAGCGCGTGTCCCGGGCCCTGGCCGAGCTGGGCTACGAGCGGACCCCGTCCC
AGTGCCGGGAGCGCATCAAGACCCTTCGCAGGTGTTACAGTCGGGTGAAAGAACATGGTGTTGGGAAAAG
AAAGAGCAGTTACACATTTGAACAGTTGGAACAGGTGTTTGGTCAGGGAGGATGGGATGCTCAGCCCTGC
CAGCCTGTACTTATTAACAGTAGTGGCTTGTACCAGGAGCTGGAGTCAGATGGCAGCACTATGGAGGACT
ATTCACAGGAGGACTGGGGAAACCACAGTCAGGAGCTCCATGGCTATCCAACAGATCAGGAATTGGATGA
AATGCCAGTTTCAAAGAGAACGTTAAAAATAAAACAAGAGTCTTCTGAAGAGGCACAGAAGCGAGATACC
ATGCAGAATATTGTACAGATTTTGGAGTCGGTGCAGTTGAAATGGGAACTGTTTCAGAGTTGGACAGACT
TCTCAAGGCTCCATCTTTCCAATAAATTGGCCATTTTTGGAATTGGCTATAACACCCGCTGGAAAGAGGA
TATTCGTTACCATTATGCTGAGATCAGCTCACAGGTGCCCCTTGGCAAGCGTCTTCGCGAGTATTTCAAC
TCTGAGAAGCCTGAGGGACGGATCATTATGACCCGGGTGCAAAAAATGAACTGGAAAAATGTTTACTACA
AGTTTTTAGAGATCACCATCAGTGAAGCGAGGTGCCTAGAGCTGCACATGGAGATTGACTGGATACCCAT
TGCCCACTCGAAGCCAACCGGGGGCAATGTTGTTCAGTATTTATTGCCAGGAGGCATTCCTAAAAGCCCA
GGCCTTTATGCCATTGGCTATGAAGAATGTATCGAGAGGCCTCTCTCACCAGATGTGGAGCGCCATGCTC
TGGACCCAGGGAAAGAGGGCCGAGTCGACCTGGAGACCCTCTCAGCACAAGCCTCATTACAGGTGGAAGT
GGAACCCACCCGGATCATCTACTGCTACCTCGGTATTGCTGAGGTCAGGACTCTGCAGCAGTGCTTGTTT
TTACATTTCCAAGCAAATGCCAAAACCTTCAGTAAAGAGTGGGTTGGTATTAATGGGTTTTTGTCTCAGA
ACTGTATTGTGGATCCTGGAGTTTCCCCCAAGTCCATCTACATCAAATTTGTAGAAGTAGAGAGGGATTT
TCTTTCTGCCGGCTCATTAGTTGAGTGTCTGGAAAAAGCCATTGGATACCCCTTAAAATTTAACAACTGA

Translation (559 aa):
MAAPCGSELPANSPLKIPKMEVLSPASPGDLSDGNPSLSDPSTPRGASPLGPGSAAGSGAAASGGLGLGL
GGRGAASSSVSFSPGGGSGGAAAAAAAACRGMSWTPAETNALIAVWGNERLVEARYQQLEGAGTVFGSKA
PGPAMYERVSRALAELGYERTPSQCRERIKTLRRCYSRVKEHGVGKRKSSYTFEQLEQVFGQGGWDAQPC
QPVLINSSGLYQELESDGSTMEDYSQEDWGNHSQELHGYPTDQELDEMPVSKRTLKIKQESSEEAQKRDT
MQNIVQILESVQLKWELFQSWTDFSRLHLSNKLAIFGIGYNTRWKEDIRYHYAEISSQVPLGKRLREYFN
SEKPEGRIIMTRVQKMNWKNVYYKFLEITISEARCLELHMEIDWIPIAHSKPTGGNVVQYLLPGGIPKSP
GLYAIGYEECIERPLSPDVERHALDPGKEGRVDLETLSAQASLQVEVEPTRIIYCYLGIAEVRTLQQCLF
LHFQANAKTFSKEWVGINGFLSQNCIVDPGVSPKSIYIKFVEVERDFLSAGSLVECLEKAIGYPLKFNN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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