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Report for CCDS22915.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22915.1 Public Mus musculus 9 Epor 23 108 98 CCDS HistoryNCBI Gene:13857Re-query CCDS DB by CCDS ID:22915.1Re-query CCDS DB by GeneID:13857See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22915.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006397.6 ENSMUSP00000006397.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006397.6Link to Ensembl Protein Viewer:ENSMUSP00000006397.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000006397Re-query CCDS DB by Protein ID:ENSMUSP00000006397
Original member NCBI NM_010149.3 NP_034279.3 Updated not alive Link to Nucleotide Sequence:NM_010149.3Link to Protein Sequence:NP_034279.3Re-query CCDS DB by Nucleotide ID:NM_010149Re-query CCDS DB by Protein ID:NP_034279
Current member NCBI NM_010149.4 NP_034279.3 Accepted alive Link to Nucleotide Sequence:NM_010149.4Link to Protein Sequence:NP_034279.3Re-query CCDS DB by Nucleotide ID:NM_010149Re-query CCDS DB by Protein ID:NP_034279Link to BLAST:NP_034279.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034279.3 507 P14753-1 507 100% 0 0

Chromosomal Locations for CCDS 22915.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21959059 21959670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21959761 21959848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21960524 21960611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21960690 21960843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21961448 21961605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21961691 21961866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21962204 21962336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21963317 21963431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1524 nt):
ATGGACAAACTCAGGGTGCCCCTCTGGCCTCGGGTAGGCCCCCTCTGTCTCCTACTTGCTGGGGCAGCCT
GGGCACCTTCACCCAGCCTCCCGGACCCCAAGTTTGAGAGCAAAGCGGCCCTGCTGGCATCCCGGGGCTC
CGAAGAACTTCTGTGCTTCACCCAACGCTTGGAAGACTTGGTGTGTTTCTGGGAGGAAGCGGCGAGCTCC
GGGATGGACTTCAACTACAGCTTCTCATACCAGCTCGAGGGTGAGTCACGAAAGTCATGTAGCCTGCACC
AGGCTCCCACCGTCCGCGGCTCCGTGCGTTTCTGGTGTTCACTGCCAACAGCGGACACATCGAGTTTTGT
GCCGCTGGAGCTGCAGGTGACGGAGGCGTCCGGTTCTCCTCGCTATCACCGCATCATCCATATCAATGAA
GTAGTGCTCCTGGACGCCCCCGCGGGGCTGCTGGCGCGCCGGGCAGAAGAGGGCAGCCACGTGGTGCTGC
GCTGGCTGCCACCTCCTGGAGCACCTATGACCACCCACATCCGATATGAAGTGGACGTGTCGGCAGGCAA
CCGGGCAGGAGGGACACAAAGGGTGGAGGTCCTGGAAGGCCGCACTGAGTGTGTTCTGAGCAACCTGCGG
GGCGGGACGCGCTACACCTTCGCTGTTCGAGCGCGCATGGCCGAGCCGAGCTTCAGCGGATTCTGGAGTG
CCTGGTCTGAGCCCGCGTCACTACTGACCGCTAGCGACCTGGACCCTCTCATCTTGACGCTGTCTCTCAT
TCTGGTCCTCATCTCGCTGTTGCTGACGGTTCTGGCCCTGCTGTCCCACCGCCGGACTCTGCAGCAGAAG
ATCTGGCCTGGCATCCCAAGCCCAGAGAGCGAGTTTGAGGGTCTCTTCACCACCCACAAGGGTAACTTCC
AGCTGTGGCTGCTGCAGCGTGATGGTTGTCTGTGGTGGAGCCCGGGCAGCTCCTTCCCTGAGGATCCACC
TGCCCACCTAGAGGTCCTCTCAGAGCCACGCTGGGCAGTGACTCAGGCTGGGGACCCAGGGGCAGATGAT
GAGGGGCCCTTACTGGAGCCGGTGGGCAGTGAGCATGCCCAGGACACCTACTTGGTATTGGATAAGTGGT
TGCTGCCCCGGACCCCATGCAGTGAGAACCTCTCAGGGCCTGGGGGCAGTGTGGACCCTGTGACTATGGA
TGAAGCTTCAGAAACATCTTCCTGCCCGTCTGACTTGGCCTCAAAGCCCAGGCCAGAGGGCACCTCACCT
TCCAGCTTTGAGTACACCATCCTGGACCCCAGCTCTCAGCTCCTGTGCCCTCGGGCACTGCCTCCCGAGC
TACCTCCCACTCCACCTCACTTGAAGTACCTATACCTTGTGGTGTCCGATTCTGGCATCTCAACAGATTA
CAGTTCGGGGGGCTCTCAGGGAGTCCACGGGGACTCATCTGATGGCCCCTACTCCCACCCCTATGAGAAC
AGCCTTGTCCCAGACTCAGAGCCTCTGCATCCCGGCTATGTGGCCTGCTCCTAG

Translation (507 aa):
MDKLRVPLWPRVGPLCLLLAGAAWAPSPSLPDPKFESKAALLASRGSEELLCFTQRLEDLVCFWEEAASS
GMDFNYSFSYQLEGESRKSCSLHQAPTVRGSVRFWCSLPTADTSSFVPLELQVTEASGSPRYHRIIHINE
VVLLDAPAGLLARRAEEGSHVVLRWLPPPGAPMTTHIRYEVDVSAGNRAGGTQRVEVLEGRTECVLSNLR
GGTRYTFAVRARMAEPSFSGFWSAWSEPASLLTASDLDPLILTLSLILVLISLLLTVLALLSHRRTLQQK
IWPGIPSPESEFEGLFTTHKGNFQLWLLQRDGCLWWSPGSSFPEDPPAHLEVLSEPRWAVTQAGDPGADD
EGPLLEPVGSEHAQDTYLVLDKWLLPRTPCSENLSGPGGSVDPVTMDEASETSSCPSDLASKPRPEGTSP
SSFEYTILDPSSQLLCPRALPPELPPTPPHLKYLYLVVSDSGISTDYSSGGSQGVHGDSSDGPYSHPYEN
SLVPDSEPLHPGYVACS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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