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Report for CCDS22674.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22674.1 Public Mus musculus 8 Fa2h 23 108 98 CCDS HistoryNCBI Gene:338521Re-query CCDS DB by CCDS ID:22674.1Re-query CCDS DB by GeneID:338521See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22674.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038475.8 ENSMUSP00000043597.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038475.8Link to Ensembl Protein Viewer:ENSMUSP00000043597.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000038475Re-query CCDS DB by Protein ID:ENSMUSP00000043597
Original member Current member NCBI NM_178086.3 NP_835187.2 Accepted alive Link to Nucleotide Sequence:NM_178086.3Link to Protein Sequence:NP_835187.2Re-query CCDS DB by Nucleotide ID:NM_178086Re-query CCDS DB by Protein ID:NP_835187Link to BLAST:NP_835187.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_835187.2 372 Q5MPP0-1 372 100% 0 0

Chromosomal Locations for CCDS 22674.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 111346442 111346521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111347931 111348183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111349204 111349376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111355400 111355506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111356078 111356220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111366394 111366486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111393483 111393752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGGCCCCCGCTCCGCCCCCCGCCGCCTCTTTCACGCCCGCCGAGGTCCAGCGGCGCCTGGCGGCCGGTG
CCTGCTGGGTCCGCCGCGGGGCCAGCCTCTACGACCTCACCAGCTTCGTGCGGCATCATCCGGGGGGCGA
GCAGCTGCTGCTGGCGCGGGCTGGCCAGGACATCAGTGCCGACCTGGATGGGCCACCTCACAGACACTCC
GACAACGCCCGCCGCTGGCTGGAGCAGTACTATGTGGGCGAACTGCGAGCGGACCCGCAGGATCCCACAG
AGAATGGTGCTGTAGCCTCTGCAGAGACTCAGAAGACAGACCCTGCTCTTGAGCCACAGTTCAAAGTGGT
GGACTGGGACAAGGACCTGGTGGACTGGCAGAAACCTCTGCTGTGGCAGGTGGGCCACTTGGGGGAGAAG
TATGATGAGTGGGTTCACCAACCAGTGGCCAGGCCCATTCGCCTCTTCCACTCAGACCTCATCGAGGCCT
TCTCCAAGACTGTCTGGTATAGTGTCCCCATCATCTGGGTGCCCCTGGTGCTGTACCTCAGCTGGTCCTA
CTACCGAACCCTCACCCAGGACAACATCCGGCTCTTCGCATCACTCACAAGAGAGTATTCAATGATGATG
CCGGAGTCGGTGTTCATAGGCCTCTTTGTGCTGGGCATGCTTTTTTGGACCTTTGTGGAATACGTCATCC
ACCGCTTCCTGTTCCATATGAAGCCCCCCAGCAACAGCCATTACCTCATCATGTTGCATTTTGTCATGCA
CGGCCAGCACCACAAGGCACCGTTTGATGGCTCCCGTCTGGTCTTCCCCCCAGTGCCAGCCTCCCTAGTG
ATTGCCTTCTTCTATGTGTTCCTGCGGCTCATTCTGCCTGAGACCGTGGGAGGCATCATCTTTGCTGGGG
GTCTCCTGGGCTATGTCCTCTATGACATGACACATTACTACCTGCACTTCGGCTCTCCACACAAGGGCTC
CTACCTGTACAACATGAAGGCCCACCATGTCAAGCATCACTTCGAATACCAGAAATCAGGGTTTGGCATC
AGCACTAAACTGTGGGATTACTTTTTCCACACCCTCATTCCAGAGGAAGCCCACCCGAAGATGCAGTGA

Translation (372 aa):
MAPAPPPAASFTPAEVQRRLAAGACWVRRGASLYDLTSFVRHHPGGEQLLLARAGQDISADLDGPPHRHS
DNARRWLEQYYVGELRADPQDPTENGAVASAETQKTDPALEPQFKVVDWDKDLVDWQKPLLWQVGHLGEK
YDEWVHQPVARPIRLFHSDLIEAFSKTVWYSVPIIWVPLVLYLSWSYYRTLTQDNIRLFASLTREYSMMM
PESVFIGLFVLGMLFWTFVEYVIHRFLFHMKPPSNSHYLIMLHFVMHGQHHKAPFDGSRLVFPPVPASLV
IAFFYVFLRLILPETVGGIIFAGGLLGYVLYDMTHYYLHFGSPHKGSYLYNMKAHHVKHHFEYQKSGFGI
STKLWDYFFHTLIPEEAHPKMQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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