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Report for CCDS22203.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22203.1 Public Mus musculus 8 Star 23 108 98 CCDS HistoryNCBI Gene:20845Re-query CCDS DB by CCDS ID:22203.1Re-query CCDS DB by GeneID:20845See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22203.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033979.5 ENSMUSP00000033979.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033979.5Link to Ensembl Protein Viewer:ENSMUSP00000033979.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033979Re-query CCDS DB by Protein ID:ENSMUSP00000033979
Original member Current member NCBI NM_011485.5 NP_035615.2 Accepted alive Link to Nucleotide Sequence:NM_011485.5Link to Protein Sequence:NP_035615.2Re-query CCDS DB by Nucleotide ID:NM_011485Re-query CCDS DB by Protein ID:NP_035615Link to BLAST:NP_035615.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035615.2 284 P51557 284 100% 0 0

Chromosomal Locations for CCDS 22203.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 25808569 25808632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25809456 25809566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25809807 25809934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25810945 25811103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25811213 25811397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25811790 25811883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25812773 25812886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGTTCCTCGCTACGTTCAAGCTGTGTGCTGGAAGCTCCTATAGACATATGCGGAATATGAAAGGATTAA
GGCACCAAGCTGTGCTGGCCATTGGCCAAGAGCTCAACTGGAGAGCACTGGGGGATTCCAGTCCCGGGTG
GATGGGTCAAGTTCGACGTCGGAGCTCTCTGCTTGGTTCTCAACTGGAAGCAACACTCTATAGTGACCAG
GAGCTGTCCTACATCCAGCAGGGAGAGGTGGCTATGCAGAAGGCCTTGGGCATACTCAACAACCAGGAAG
GCTGGAAGAAGGAAAGCCAGCAGGAGAACGGGGACGAAGTGCTAAGTAAGATGGTGCCAGATGTGGGCAA
GGTGTTTCGCTTGGAGGTGGTGGTAGACCAGCCCATGGACAGACTCTATGAAGAACTTGTGGACCGCATG
GAGGCCATGGGAGAGTGGAACCCAAATGTCAAGGAGATCAAGGTCCTGCAGAGGATTGGAAAAGACACGG
TCATCACTCATGAGCTGGCTGCGGCGGCAGCAGGCAACCTGGTGGGGCCTCGAGACTTCGTGAGCGTGCG
CTGTACCAAGCGCAGAGGTTCCACCTGTGTGCTGGCAGGCATGGCCACACATTTTGGGGAGATGCCGGAG
CAGAGTGGTGTCATCAGAGCTGAACACGGCCCCACCTGCATGGTGCTTCATCCACTGGCTGGAAGTCCCT
CCAAGACTAAACTCACTTGGCTGCTCAGTATTGACCTGAAGGGGTGGCTGCCGAAGACAATCATCAACCA
GGTCCTATCGCAGACCCAGATAGAGTTCGCCAACCACCTGCGCAAGCGCCTGGAAGCCAGCCCTGCCTCT
GAGGCCCAGTGTTAA

Translation (284 aa):
MFLATFKLCAGSSYRHMRNMKGLRHQAVLAIGQELNWRALGDSSPGWMGQVRRRSSLLGSQLEATLYSDQ
ELSYIQQGEVAMQKALGILNNQEGWKKESQQENGDEVLSKMVPDVGKVFRLEVVVDQPMDRLYEELVDRM
EAMGEWNPNVKEIKVLQRIGKDTVITHELAAAAAGNLVGPRDFVSVRCTKRRGSTCVLAGMATHFGEMPE
QSGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGWLPKTIINQVLSQTQIEFANHLRKRLEASPAS
EAQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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