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Report for CCDS21973.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21973.1 Public Mus musculus 7 Or13a27 23 108 98 CCDS HistoryNCBI Gene:18361Re-query CCDS DB by CCDS ID:21973.1Re-query CCDS DB by GeneID:18361See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21973.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075470.1 ENSMUSP00000074916.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075470.1Link to Ensembl Protein Viewer:ENSMUSP00000074916.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000075470Re-query CCDS DB by Protein ID:ENSMUSP00000074916
Original member Current member EBI ENSMUST00000210932.2 ENSMUSP00000147557.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210932.2Link to Ensembl Protein Viewer:ENSMUSP00000147557.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000210932Re-query CCDS DB by Protein ID:ENSMUSP00000147557
Original member Current member EBI ENSMUST00000211031.2 ENSMUSP00000147996.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000211031.2Link to Ensembl Protein Viewer:ENSMUSP00000147996.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000211031Re-query CCDS DB by Protein ID:ENSMUSP00000147996
Original member Current member EBI ENSMUST00000215023.1 ENSMUSP00000150518.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215023.1Link to Ensembl Protein Viewer:ENSMUSP00000150518.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215023Re-query CCDS DB by Protein ID:ENSMUSP00000150518
Original member Current member EBI ENSMUST00000216027.1 ENSMUSP00000150685.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216027.1Link to Ensembl Protein Viewer:ENSMUSP00000150685.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216027Re-query CCDS DB by Protein ID:ENSMUSP00000150685
Original member Current member NCBI NM_146955.1 NP_667166.1 Accepted alive Link to Nucleotide Sequence:NM_146955.1Link to Protein Sequence:NP_667166.1Re-query CCDS DB by Nucleotide ID:NM_146955Re-query CCDS DB by Protein ID:NP_667166Link to BLAST:NP_667166.1

Chromosomal Locations for CCDS 21973.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140345052 140345987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGATGTCACGACTCAACCAGACAGTAGTGACAGAGTTTATACTGCAAGGTTTCTCAGAGCACCCTAGTC
TAAGACTGTTCCTGACAGGCTGCTTCTTGTCCCTCTATGTAATGGCTCTAATGGGCAACATTTTGATCAT
TGCTTTGGTCACCTTCAGCACTGGGCTCCACAGTCCCATGTACTTTTTCCTGTGCAACCTGGCCACCATG
GATATTATCTGCACCTCCTCTGTGCTGCCCAAGGCGCTGGTTGGTCTACTATCTGAGGAAAACACCATCT
CCTTTAAAGGGTGCATGGCCCAGCTCTTCTTCCTTGTGTGGTCCTTGTCTTCAGAGCTGCTGCTGCTCAC
AGTCATGGCCTATGACCGCTATGTGGCCATCTGCTTTCCCCTGCACTACAGCTCTAGAATGAGCCCACAG
TTGTGTGGGGCTCTGGCCATGGGTGTATGGTCCATCTGTGCTCTGAATGCATCTATCAACACTGGTCTGA
TGACACGGCTGTCATTCTGTGGACCCAAGGTCATCACCCACTTCTTCTGTGAGATTCCCCCACTCCTTCT
GCTCTCCTGTAGCCCCACATACGTAAACAGCATTATGACTCTAATAGCAGATGTCTTCTATGGAGGCATC
AATTTTGTGCTTACCTTACTATCCTATGGCTGCATCATTGCCAGCATCCTGCGCATGCGTTCTGCTGAGG
GCAAGAGGAAGGCCTTTTCTACCTGCTCATCCCACCTCATCGTGGTCTCTGTGTACTACTCATCTGTGTT
CTGTGCCTATGTCAGCCCTGCATCCAGCTATAGCCCAGAAAGAAGCAAAGTTACCTCTGTGTTGTACTCA
TTCCTCAGCCCAACCCTGAACCCCCTCATTTACACATTGAGGAACAAAGATGTCAAGCTCGCCATTGGCA
GGCTCTTGCCCTCTTTCTCACATTAA

Translation (311 aa):
MMSRLNQTVVTEFILQGFSEHPSLRLFLTGCFLSLYVMALMGNILIIALVTFSTGLHSPMYFFLCNLATM
DIICTSSVLPKALVGLLSEENTISFKGCMAQLFFLVWSLSSELLLLTVMAYDRYVAICFPLHYSSRMSPQ
LCGALAMGVWSICALNASINTGLMTRLSFCGPKVITHFFCEIPPLLLLSCSPTYVNSIMTLIADVFYGGI
NFVLTLLSYGCIIASILRMRSAEGKRKAFSTCSSHLIVVSVYYSSVFCAYVSPASSYSPERSKVTSVLYS
FLSPTLNPLIYTLRNKDVKLAIGRLLPSFSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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