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Report for CCDS21917.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21917.1 Public Mus musculus 7 Hmx3 23 108 98 CCDS HistoryNCBI Gene:15373Re-query CCDS DB by CCDS ID:21917.1Re-query CCDS DB by GeneID:15373See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21917.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046093.5 ENSMUSP00000039018.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046093.5Link to Ensembl Protein Viewer:ENSMUSP00000039018.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000046093Re-query CCDS DB by Protein ID:ENSMUSP00000039018
Original member Current member NCBI NM_008257.3 NP_032283.3 Accepted alive Link to Nucleotide Sequence:NM_008257.3Link to Protein Sequence:NP_032283.3Re-query CCDS DB by Nucleotide ID:NM_008257Re-query CCDS DB by Protein ID:NP_032283Link to BLAST:NP_032283.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032283.3 356 P42581 356 100% 0 0

Chromosomal Locations for CCDS 21917.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 131542963 131543362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 131543965 131544635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGCCGGAGCCCGGGCCGGACGCCTCGGGCACTGCCAGCGCGCCGCCCCCGCAGCCACCGCCCCAACCTC
CCGCGCCCAAGGAATCCCCGTTCTCCATCAGGAACCTGCTCAACGGAGACCATCACCGGCCGCCCCCGAA
GCCTCAGCCGCCCCCACGAACGCTCTTTGCTCCGGCCTCGGCTGCTGCCGCCGCCGCCGCCGCTGCGGCC
GCCGCAGCCAAAGGTGCCCTGGAGGGCGCCGCGGGCTTCGCGCTCTCGCAGGTGGGCGACCTGGCTTTCC
CCCGCTTTGAGATCCCAGCGCAGAGGTTTGCCCTGCCCGCGCACTACCTGGAGCGCTCCCCGGCCTGGTG
GTACCCCTACACCCTGACCCCCGCCGGCGGTCACCTCCCGCGACCAGAAGCCTCGGAAAAGGCCCTCCTG
CGAGACTCCTCCCCTGCGTCCGGCACCGATCGAGACTCCCCGGAGCCTCTGCTCAAGGCTGACCCCGACC
ACAAGGAGCTGGACTCCAAGAGCCCGGACGAGATCATTCTGGAAGAGAGCGACTCGGAGGAAGGCAAAAA
AGAAGGCGAGGCGGTGCCTGGCGCGGCCGGGACGACCGTAGGGGCGACTACGGCGACACCGGGCTCAGAG
GACTGGAAGGCGGGCGCCGAGAGTCCCGAGAAGAAGCCGGCGTGCCGCAAAAAGAAGACGCGCACCGTCT
TCTCGCGCAGCCAGGTCTTCCAGCTCGAGTCCACATTCGACATGAAACGCTACCTGAGCAGCTCGGAGCG
CGCTGGCCTGGCCGCGTCGCTTCACCTCACCGAGACGCAGGTCAAGATCTGGTTCCAGAATCGCCGCAAC
AAGTGGAAGCGACAGCTGGCGGCCGAGCTGGAGGCGGCCAACCTGAGCCACGCCGCTGCGCAGCGCATCG
TACGCGTGCCCATCCTCTACCACGAGAACTCTGCGGCCGAGGGGGCGGCAGCGGCTGCGGGGGCACCGGT
GCCAGTCAGCCAGCCGCTGCTCACCTTCCCGCACCCAGTCTACTACTCGCACCCGGTGGTCTCGTCCGTG
CCCCTACTAAGGCCGGTGTGA

Translation (356 aa):
MPEPGPDASGTASAPPPQPPPQPPAPKESPFSIRNLLNGDHHRPPPKPQPPPRTLFAPASAAAAAAAAAA
AAAKGALEGAAGFALSQVGDLAFPRFEIPAQRFALPAHYLERSPAWWYPYTLTPAGGHLPRPEASEKALL
RDSSPASGTDRDSPEPLLKADPDHKELDSKSPDEIILEESDSEEGKKEGEAVPGAAGTTVGATTATPGSE
DWKAGAESPEKKPACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRN
KWKRQLAAELEAANLSHAAAQRIVRVPILYHENSAAEGAAAAAGAPVPVSQPLLTFPHPVYYSHPVVSSV
PLLRPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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