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Report for CCDS21878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21878.1 Public Mus musculus 7 Orai3 23 108 98 CCDS HistoryNCBI Gene:269999Re-query CCDS DB by CCDS ID:21878.1Re-query CCDS DB by GeneID:269999See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21878.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061587.12 ENSMUSP00000050279.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061587.12Link to Ensembl Protein Viewer:ENSMUSP00000050279.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000061587Re-query CCDS DB by Protein ID:ENSMUSP00000050279
Original member Current member NCBI NM_198424.3 NP_940816.1 Accepted alive Link to Nucleotide Sequence:NM_198424.3Link to Protein Sequence:NP_940816.1Re-query CCDS DB by Nucleotide ID:NM_198424Re-query CCDS DB by Protein ID:NP_940816Link to BLAST:NP_940816.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940816.1 290 Q6P8G8 290 100% 0 0

Chromosomal Locations for CCDS 21878.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 127769989 127770216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 127773557 127774201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGAAGGGCGGCGAGGGGGACACGGGCGAACAGGCCCCGCTGAACCCGGAGGTGGACAGCCCCGCGGGCT
CAGCCACGTACCGGGAGTTCGTGCACCGCGGCTACCTGGACCTTATGGGGGCCAGTCAGCACTCTCTGCG
GGCGCTCAGCTGGCGCCGCCTCTACCTCAGCCGGGCTAAGCTCAAAGCCTCCAGCCGCACATCTGCTCTG
CTGTCGGGCTTCGCCATGGTGGCCATGGTGGAGGTACAGCTGGAGAACGATCATGAATACCCACCAGGCC
TGCTGGTGGCATTTAGTGCCTGCACCACTGTGTTAGTAGCTGTGCACCTCTTTGCACTGATGGTCTCCAC
ATGTCTGCTGCCCCATATTGAAGCCGTGAGCAACATCCACAATCTCAACTCTGTCCACCAGTCACCACAC
CAACGACTGCACAGATACGTGGAGCTTGCCTGGGGCTTCTCTACTGCCTTGGGTACCTTTCTCTTCCTGG
CTGAAGTTGTTCTGGTGGGCTGGGTCAAGTTTGTGCCCATTGGGGCACCCATGGGTAAACCAGCTCCTGT
TGTACCTATGTCCCAGGTGCCACCTGTGACTGTCTCCCTTAGTTTAGCTTCTAACCTCACACCATCCTCT
GCTTCTATTACCACATCACAACAGCCTTCCAAAGCCTGTCCACCCCGGCAAGTGTGTGATAGTGCTCATG
GACCAGGCTGGCAGGCAGCTATGGCCTCCACGGCAATCATGGTACCTGTGGGACTAGTGTTTATGGCCTT
TGCCCTACATTTCTACCGATCCTTGGTTGCCCACAAGACAGACCGCCACAAGCAGGAGCTGGAGGAGCTC
AGTCGCCTGCAGGGGGAGCTGCAGGCTGTGTAA

Translation (290 aa):
MKGGEGDTGEQAPLNPEVDSPAGSATYREFVHRGYLDLMGASQHSLRALSWRRLYLSRAKLKASSRTSAL
LSGFAMVAMVEVQLENDHEYPPGLLVAFSACTTVLVAVHLFALMVSTCLLPHIEAVSNIHNLNSVHQSPH
QRLHRYVELAWGFSTALGTFLFLAEVVLVGWVKFVPIGAPMGKPAPVVPMSQVPPVTVSLSLASNLTPSS
ASITTSQQPSKACPPRQVCDSAHGPGWQAAMASTAIMVPVGLVFMAFALHFYRSLVAHKTDRHKQELEEL
SRLQGELQAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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