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Report for CCDS21844.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21844.1 Public Mus musculus 7 Ppp4c 23 108 98 CCDS HistoryNCBI Gene:56420Re-query CCDS DB by CCDS ID:21844.1Re-query CCDS DB by GeneID:56420See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21844.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032936.7 ENSMUSP00000032936.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032936.7Link to Ensembl Protein Viewer:ENSMUSP00000032936.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032936Re-query CCDS DB by Protein ID:ENSMUSP00000032936
Original member Current member EBI ENSMUST00000206570.1 ENSMUSP00000146245.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000206570.1Link to Ensembl Protein Viewer:ENSMUSP00000146245.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000206570Re-query CCDS DB by Protein ID:ENSMUSP00000146245
Original member Current member NCBI NM_001360464.1 NP_001347393.1 Accepted alive Link to Nucleotide Sequence:NM_001360464.1Link to Protein Sequence:NP_001347393.1Re-query CCDS DB by Nucleotide ID:NM_001360464Re-query CCDS DB by Protein ID:NP_001347393Link to BLAST:NP_001347393.1
Original member Current member NCBI NM_019674.4 NP_062648.1 Accepted alive Link to Nucleotide Sequence:NM_019674.4Link to Protein Sequence:NP_062648.1Re-query CCDS DB by Nucleotide ID:NM_019674Re-query CCDS DB by Protein ID:NP_062648Link to BLAST:NP_062648.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347393.1 307 P97470 307 100% 0 0
NP_062648.1 307 P97470 307 100% 0 0

Chromosomal Locations for CCDS 21844.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 126786162 126786291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126786372 126786561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126787220 126787346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126787437 126787610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126788117 126788218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126788384 126788434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126789024 126789075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126792061 126792158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGGCGGAGATCAGCGACCTGGACCGGCAGATCGAGCAGCTACGGCGCTGCGAGCTGATCAAAGAGAGCG
AAGTCAAGGCCCTGTGCGCCAAGGCCAGAGAAATCTTGGTAGAAGAGAGCAACGTGCAGAGGGTGGACTC
GCCAGTCACAGTATGCGGTGACATCCATGGACAATTCTATGACCTCAAGGAGCTGTTCAGAGTAGGTGGC
GATGTCCCTGAGACCAACTACCTCTTCATGGGAGACTTTGTGGACCGTGGTTTCTACAGTGTTGAAACCT
TCCTCCTCCTGCTGGCTCTTAAGGTTCGCTATCCTGACAGAATCACTTTGATCCGGGGCAATCATGAGAG
TCGCCAGATTACCCAGGTCTATGGGTTCTATGATGAGTGCTTACGGAAATATGGTTCAGTGACTGTATGG
CGCTACTGTACTGAGATCTTTGACTACCTCAGCCTGTCTGCCATCATTGATGGCAAGATCTTCTGTGTGC
ATGGAGGTCTTTCCCCTTCCATCCAGACCTTGGACCAGATCCGGACAATTGACCGAAAGCAAGAGGTACC
CCATGATGGACCCATGTGCGACCTCCTGTGGTCTGACCCTGAAGACACAACAGGCTGGGGAGTGAGCCCC
CGCGGGGCAGGTTACCTGTTTGGCAGTGACGTGGTCGCCCAGTTCAATGCAGCCAACGACATTGATATGA
TCTGCCGTGCCCACCAATTAGTGATGGAAGGCTACAAGTGGCACTTCAATGAGACCGTGCTTACTGTGTG
GTCAGCGCCTAATTACTGCTACCGCTGTGGCAATGTGGCAGCCATCTTAGAACTGGATGAGCACCTCCAG
AAAGATTTCATCATCTTCGAGGCTGCACCCCAAGAGACACGTGGCATCCCCTCCAAAAAGCCAGTGGCCG
ACTATTTCCTGTGA

Translation (307 aa):
MAEISDLDRQIEQLRRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGG
DVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVTVW
RYCTEIFDYLSLSAIIDGKIFCVHGGLSPSIQTLDQIRTIDRKQEVPHDGPMCDLLWSDPEDTTGWGVSP
RGAGYLFGSDVVAQFNAANDIDMICRAHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILELDEHLQ
KDFIIFEAAPQETRGIPSKKPVADYFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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