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Report for CCDS21392.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21392.1 Public Mus musculus 7 Cib1 23 108 98 CCDS HistoryNCBI Gene:23991Re-query CCDS DB by CCDS ID:21392.1Re-query CCDS DB by GeneID:23991See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21392.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065163.14 ENSMUSP00000070901.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065163.14Link to Ensembl Protein Viewer:ENSMUSP00000070901.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000065163Re-query CCDS DB by Protein ID:ENSMUSP00000070901
Original member NCBI NM_011870.5 NP_036000.1 Updated not alive Link to Nucleotide Sequence:NM_011870.5Link to Protein Sequence:NP_036000.1Re-query CCDS DB by Nucleotide ID:NM_011870Re-query CCDS DB by Protein ID:NP_036000
Current member NCBI NM_011870.6 NP_036000.1 Accepted alive Link to Nucleotide Sequence:NM_011870.6Link to Protein Sequence:NP_036000.1Re-query CCDS DB by Nucleotide ID:NM_011870Re-query CCDS DB by Protein ID:NP_036000Link to BLAST:NP_036000.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036000.1 191 Q9Z0F4 191 100% 0 0

Chromosomal Locations for CCDS 21392.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 80227365 80227386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80227994 80228082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80228162 80228280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80228398 80228548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80230316 80230424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80232344 80232378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80232510 80232560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGGGAGGTTCGGGCAGTCGCCTGTCTAAGGAGCTGCTGGCCGAGTACCAGGACCTGACGTTCCTGACCA
AGCAGGAGATCCTCCTAGCCCACAGACGCTTTTGTGAGCTGCTTCCCCCAGAGCAGCGGACCGTGGAGGA
GTCACTGCACACCCGAGTATCGTTTGAGCAGATCCTCAGCCTCCCAGAGCTCAAGGCTAACCCTTTCAAG
GAGCGAATCTGCATGGTCTTCTCCACATCACCTACCAGAGACAGCCTGAGCTTTGAGGACTTCCTGGACC
TCCTGAGTGTCTTCAGTGACACAGCAACCCCAGACATCAAGTCACACTATGCCTTCCGCATCTTTGACTT
TGATGACGATGGAACCCTGGACAGAGAAGACCTGAGCCAGCTTGTGAATTGCCTCACGGGAGAGGGCGAG
GACACTCGGCTCAGTGCTTCTGAGATGAAGCAGCTGATTGACAATATCCTGGAAGAGTCAGACATTGACA
GGGATGGGACCATCAATCTTTCCGAGTTCCAGCATGTCATCTCGCGCTCACCAGACTTTGCCAGCTCCTT
TAAGATTGTCCTGTGA

Translation (191 aa):
MGGSGSRLSKELLAEYQDLTFLTKQEILLAHRRFCELLPPEQRTVEESLHTRVSFEQILSLPELKANPFK
ERICMVFSTSPTRDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLDREDLSQLVNCLTGEGE
DTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISRSPDFASSFKIVL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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