NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21184.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21184.2 Public Mus musculus 7 Klk6 23 108 98 CCDS HistoryNCBI Gene:19144Re-query CCDS DB by CCDS ID:21184.2Re-query CCDS DB by GeneID:19144See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 21184.2
The coding region has been updated to extend the N-terminus. The use of an alternative upstream start codon would result in a protein that is 7 aa longer.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 21184.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107966.9 ENSMUSP00000103600.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107966.9Link to Ensembl Protein Viewer:ENSMUSP00000103600.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000107966Re-query CCDS DB by Protein ID:ENSMUSP00000103600
Original member Current member EBI ENSMUST00000107967.2 ENSMUSP00000103601.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107967.2Link to Ensembl Protein Viewer:ENSMUSP00000103601.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107967Re-query CCDS DB by Protein ID:ENSMUSP00000103601
Original member Current member EBI ENSMUST00000107968.9 ENSMUSP00000103602.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107968.9Link to Ensembl Protein Viewer:ENSMUSP00000103602.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000107968Re-query CCDS DB by Protein ID:ENSMUSP00000103602
Original member NCBI NM_001164696.1 NP_001158168.1 Updated not alive Link to Nucleotide Sequence:NM_001164696.1Link to Protein Sequence:NP_001158168.1Re-query CCDS DB by Nucleotide ID:NM_001164696Re-query CCDS DB by Protein ID:NP_001158168
Current member NCBI NM_001164696.2 NP_001158168.1 Accepted alive Link to Nucleotide Sequence:NM_001164696.2Link to Protein Sequence:NP_001158168.1Re-query CCDS DB by Nucleotide ID:NM_001164696Re-query CCDS DB by Protein ID:NP_001158168Link to BLAST:NP_001158168.1
Original member NCBI NM_001164697.1 NP_001158169.1 Updated not alive Link to Nucleotide Sequence:NM_001164697.1Link to Protein Sequence:NP_001158169.1Re-query CCDS DB by Nucleotide ID:NM_001164697Re-query CCDS DB by Protein ID:NP_001158169
Current member NCBI NM_001164697.2 NP_001158169.1 Accepted alive Link to Nucleotide Sequence:NM_001164697.2Link to Protein Sequence:NP_001158169.1Re-query CCDS DB by Nucleotide ID:NM_001164697Re-query CCDS DB by Protein ID:NP_001158169Link to BLAST:NP_001158169.1
Original member NCBI NM_001164698.1 NP_001158170.1 Updated not alive Link to Nucleotide Sequence:NM_001164698.1Link to Protein Sequence:NP_001158170.1Re-query CCDS DB by Nucleotide ID:NM_001164698Re-query CCDS DB by Protein ID:NP_001158170
Current member NCBI NM_001164698.2 NP_001158170.1 Accepted alive Link to Nucleotide Sequence:NM_001164698.2Link to Protein Sequence:NP_001158170.1Re-query CCDS DB by Nucleotide ID:NM_001164698Re-query CCDS DB by Protein ID:NP_001158170Link to BLAST:NP_001158170.1
Original member NCBI NM_011177.2 NP_035307.2 Updated not alive Link to Nucleotide Sequence:NM_011177.2Link to Protein Sequence:NP_035307.2Re-query CCDS DB by Nucleotide ID:NM_011177Re-query CCDS DB by Protein ID:NP_035307
Current member NCBI NM_011177.3 NP_035307.2 Accepted alive Link to Nucleotide Sequence:NM_011177.3Link to Protein Sequence:NP_035307.2Re-query CCDS DB by Nucleotide ID:NM_011177Re-query CCDS DB by Protein ID:NP_035307Link to BLAST:NP_035307.2

Chromosomal Locations for CCDS 21184.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 43826057 43826117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43826799 43826955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43828424 43828671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43829137 43829273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43831489 43831647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGCCCATGAAGATGCTGACAATGAAGATGCTGGCCCTGTGCTTGGTTCTTGCTAAATCAGCCTGGTCGG
AGGAACAGGAGAAGGTGGTTCATGGAGGCCCGTGTTTGAAGGACTCCCACCCTTTCCAGGCTGCCCTCTA
CACCTCAGGTCACTTGCTGTGTGGTGGGGTCCTCATTGACCCACAGTGGGTGCTGACAGCTGCCCACTGC
AAAAAACCGAATCTGCAGGTGATCTTGGGGAAACACAACCTACGGCAAACAGAGACTTTCCAAAGGCAAA
TCTCAGTGGACAGGACTATTGTCCATCCCCGCTACAACCCTGAAACCCACGACAATGACATCATGATGGT
GCATCTGAAAAATCCAGTCAAATTCTCTAAAAAGATCCAGCCTCTGCCCTTGAAGAATGACTGCTCTGAG
GAGAATCCCAACTGCCAGATCCTGGGCTGGGGCAAGATGGAAAATGGTGACTTCCCAGATACCATTCAGT
GTGCTGATGTCCATCTGGTGCCCCGGGAGCAGTGTGAGCGTGCCTACCCTGGCAAGATCACCCAGAGCAT
GGTGTGCGCAGGCGACATGAAAGAAGGCAACGATTCCTGTCAGGGTGATTCTGGAGGTCCCCTAGTATGT
GGGGGTCGCCTCCGAGGGCTCGTGTCATGGGGTGACATGCCCTGTGGATCAAAGGAGAAGCCAGGAGTTT
ACACCGATGTCTGCACTCATATCAGATGGATCCAAAACATCCTCAGAAACAAGTGGCTGTGA

Translation (253 aa):
MPMKMLTMKMLALCLVLAKSAWSEEQEKVVHGGPCLKDSHPFQAALYTSGHLLCGGVLIDPQWVLTAAHC
KKPNLQVILGKHNLRQTETFQRQISVDRTIVHPRYNPETHDNDIMMVHLKNPVKFSKKIQPLPLKNDCSE
ENPNCQILGWGKMENGDFPDTIQCADVHLVPREQCERAYPGKITQSMVCAGDMKEGNDSCQGDSGGPLVC
GGRLRGLVSWGDMPCGSKEKPGVYTDVCTHIRWIQNILRNKWL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH