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Report for CCDS21172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21172.1 Public Mus musculus 7 Siglecl2 23 108 98 CCDS HistoryNCBI Gene:74054Re-query CCDS DB by CCDS ID:21172.1Re-query CCDS DB by GeneID:74054See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21172.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000013497.7 ENSMUSP00000013497.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000013497.7Link to Ensembl Protein Viewer:ENSMUSP00000013497.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000013497Re-query CCDS DB by Protein ID:ENSMUSP00000013497
Original member Current member EBI ENSMUST00000171174.7 ENSMUSP00000129888.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171174.7Link to Ensembl Protein Viewer:ENSMUSP00000129888.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171174Re-query CCDS DB by Protein ID:ENSMUSP00000129888
Original member Current member EBI ENSMUST00000191516.6 ENSMUSP00000139468.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191516.6Link to Ensembl Protein Viewer:ENSMUSP00000139468.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191516Re-query CCDS DB by Protein ID:ENSMUSP00000139468
Original member Current member NCBI NM_028737.3 NP_083013.2 Accepted alive Link to Nucleotide Sequence:NM_028737.3Link to Protein Sequence:NP_083013.2Re-query CCDS DB by Nucleotide ID:NM_028737Re-query CCDS DB by Protein ID:NP_083013Link to BLAST:NP_083013.2

Chromosomal Locations for CCDS 21172.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 43495629 43495734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43497809 43497911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43498051 43498332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43499173 43499454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43501016 43501306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43504183 43504222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGCGGTGGGGGCTCACATCCCTACTTCTGCTGTATTTGGGGTTACTTTCTCCAGTTTTGGTTGATGTCA
AGAAGACAGCAATGGAAGATGGTCTATGCAGTATGGTCCCTTGTGTGATTGAATTTTACAAGGCACCTTT
CAGAAATCCCATGGCTGTGAGCTATAGGCTTAATGAAAATATCAGCTTCCGTGTTGGTACCAGCCATCCC
AGTGCCCCCATGGGTGATCTCTCCACAGAGGAGGTGGAATACTGCATCCTGATGACCCACAGCATGCTCA
GAAGAAAATACATGACCAATTCACTCTATGTGGGTCTAGGAACTCAGAAAGACCTGACCCAAAACCCAGA
GCTTCACATCCCAGAAAGTAGTGTGGCTGGAGAGCCTGTGACTTTGAGCTGTACCATCCAAAGCACCTGC
CAAGAGCCCAACGCTCTTTTTCTCTCCTGGAAAGGACCCATCATGTCTTCCAACACAACCATCTCCATTC
ACCCCTCTTCAGCACTGGCCATTGAACTGAAACCCGAGGACCAGGGCACCACTCTCAGATGCCACTTAAA
GCTATCCCTAGATAACTTGTCCAGCAGTAAAGTGGTCAAGCTACAACTGGTCTCACCCACCAGGCTGCTC
AACTACTCCTGTTTGCTGAAGAGGACACTCACATGTAGCTGTTCCTTCCATGGGATCCCCACACCTTTGG
TGCAGTGGTGGGTGGGAGGAACCCCTGTGAGTGTGAATAGAATAGATGGCATCCTACACCTGACTACCAC
CACACTAGAACCCTGGACCAATAGCACCATTCACCTCATTTGGGAACCAGAAATCATTAGGAGACTTCGC
TGTGAGGGGAAGAACCAATATGGAGTCCATGCTTCTAGAATCTTCTTGATACCAGATAAAAGCTCCGTTT
CTAGTGTGTTCCTGAGAGGTCTAATCCAGGGCATTGTGTATGGGGCCATAGCGTCGGCTTTATTCCTCTT
CTTCCTCGTTGTGCTGGTAATGAAGATGCTTAATTGGTGGGAAGAAAATCAAACCTGCAAGAACAAAGAA
GCCCCGACCCCCGTGAAACCAGTTTTGGGAGGAGCCAACGCTGCTGAAGTCTGA

Translation (367 aa):
MRWGLTSLLLLYLGLLSPVLVDVKKTAMEDGLCSMVPCVIEFYKAPFRNPMAVSYRLNENISFRVGTSHP
SAPMGDLSTEEVEYCILMTHSMLRRKYMTNSLYVGLGTQKDLTQNPELHIPESSVAGEPVTLSCTIQSTC
QEPNALFLSWKGPIMSSNTTISIHPSSALAIELKPEDQGTTLRCHLKLSLDNLSSSKVVKLQLVSPTRLL
NYSCLLKRTLTCSCSFHGIPTPLVQWWVGGTPVSVNRIDGILHLTTTTLEPWTNSTIHLIWEPEIIRRLR
CEGKNQYGVHASRIFLIPDKSSVSSVFLRGLIQGIVYGAIASALFLFFLVVLVMKMLNWWEENQTCKNKE
APTPVKPVLGGANAAEV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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