NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20900.1 Public Mus musculus 7 Ercc2 23 108 98 CCDS HistoryNCBI Gene:13871Re-query CCDS DB by CCDS ID:20900.1Re-query CCDS DB by GeneID:13871See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20900.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062831.15 ENSMUSP00000054380.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062831.15Link to Ensembl Protein Viewer:ENSMUSP00000054380.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000062831Re-query CCDS DB by Protein ID:ENSMUSP00000054380
Original member Current member NCBI NM_007949.5 NP_031975.2 Accepted alive Link to Nucleotide Sequence:NM_007949.5Link to Protein Sequence:NP_031975.2Re-query CCDS DB by Nucleotide ID:NM_007949Re-query CCDS DB by Protein ID:NP_031975Link to BLAST:NP_031975.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031975.2 760 O08811 760 100% 0 0

Chromosomal Locations for CCDS 20900.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19382055 19382059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19382279 19382378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19383944 19384021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19384099 19384161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19384302 19384415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19385623 19385739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19385830 19385946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19386707 19386830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19386932 19387028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19387113 19387246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19387329 19387497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19388140 19388258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19390107 19390176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19390249 19390318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19390399 19390500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19391527 19391590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19391965 19392086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19393249 19393341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19393433 19393505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19393630 19393700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19393776 19393919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19394039 19394182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19394352 19394444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2283 nt):
ATGAAGCTCAACGTGGACGGGCTGCTGGTCTACTTCCCGTACGACTACATCTACCCGGAGCAGTTCTCCT
ACATGCTGGAGCTCAAGCGCACGCTGGACGCCAAGGGTCATGGAGTCCTGGAGATGCCCTCGGGCACTGG
GAAGACAGTGTCCCTATTGGCCCTGATTGTGGCCTATCAGCGGGCTTATCCGCTGGAGGTGACCAAACTT
ATCTACTGCTCACGGACCGTGCCAGAGATTGAGAAGGTCATAGAAGAGCTTCGTAAGCTACTCAGCTTCT
ACGAGCAGCAGGAGGGCGAGAAGCTGCCGTTCTTAGGACTGGCTCTGAGCTCAAGAAAGAACCTGTGCAT
TCATCCCGAGGTGACTCCACTGCGCTTTGGGAAGGATGTTGATGGGAAGTGTCACAGCCTAACGGCGTCG
TATGTGCGGGCACAGTACCAGCAGGATGCCAGCCTGCCTCACTGCCGCTTCTATGAGGAATTTGACATCC
ATGGACGCCAGATGCCGCTCCCTGCGGGCATCTACAACCTGGATGACCTGAAGGCCCTAGGGCAGCGCCA
GGGCTGGTGCCCCTACTTCCTGGCTCGATACTCGATCCTGCATGCCAACGTGGTGGTTTACAGCTACCAC
TACCTCCTGGACCCCAAGATCGCAGACCTGGTATCCAAAGAGCTGGCTCGCAAGGCTGTTGTGGTCTTCG
ATGAAGCTCACAACATCGACAATGTCTGCATTGACTCCATGAGTGTCAACCTCACCCGCAGGACTCTGGA
CCGTTGCCAGAGCAACTTAGACACCCTACAGAAGACCGTGCTCAGGATCAAGGAGACGGATGAGCAGCGG
CTGCGGGATGAGTACCGGCGCCTGGTGGAGGGCCTGCGGGAGGCCAGTGTGGCCCGGGAGACAGATGCCC
ACCTGGCCAACCCTGTGCTGCCGGACGAGGTGCTGCAGGAGGCTGTGCCTGGCTCCATCCGTACGGCTGA
GCACTTCCTGGGCTTTCTGCGGCGGCTGCTGGAGTATGTCAAGTGGCGTCTGCGCGTGCAGCATGTGGTG
CAGGAGAGTCCACCTGCCTTTCTGAGCGGCCTGGCCCAGCGGGTGTGCATCCAGCGCAAGCCCCTCAGGT
TCTGTGCTGAACGCCTGCGCTCCCTGCTGCACACCCTGGAGATTGCCGACCTGGCCGACTTCTCCCCGCT
CACACTCCTTGCTAACTTCGCCACTCTCGTCAGCACTTACGCCAAGGGCTTCACCATTATCATTGAGCCC
TTTGACGACAGGACCCCCACCATCGCCAACCCCGTTCTGCACTTCAGCTGTATGGACGCCTCCTTGGCCA
TCAAGCCTGTGTTTGAGCGCTTCCAGTCTGTCATCATCACTTCTGGGACACTGTCCCCACTGGACATCTA
CCCCAAGATCCTGGACTTCCACCCTGTCACAATGGCAACCTTCACCATGACGCTGGCCCGAGTCTGCCTC
TGCCCGATGATCATTGGCCGTGGTAATGACCAGGTAGCAATCAGCTCCAAATTTGAGACCAGAGAAGATA
TTGCTGTGATCCGAAACTATGGCAACCTCCTGCTGGAGATGTCCGCCGTGGTCCCAGATGGCATTGTGGC
CTTCTTTACCAGCTACCAGTACATGGAAAGCACCGTGGCCTCCTGGTATGAGCAGGGCATCCTTGAGAAC
ATCCAGAGGAACAAACTGCTCTTCATTGAGACCCAGGATGGGGCTGAGACCAGTGTGGCCCTGGAGAAGT
ACCAAGAGGCATGCGAGAATGGCCGTGGGGCCATTCTGCTCTCAGTGGCTCGGGGCAAAGTATCAGAAGG
GATTGACTTTGTACACCACTACGGACGGGCTGTGATCATGTTTGGAGTTCCCTATGTCTATACCCAGAGC
CGAATTCTCAAGGCCCGGCTAGAGTATCTGCGGGACCAGTTCCAGATCCGAGAGAACGACTTCCTCACCT
TTGATGCTATGCGCCATGCAGCCCAGTGTGTGGGTCGTGCCATCAGGGGCAAGACGGACTATGGACTCAT
GGTCTTTGCTGACAAGCGGTTTGCTCGGGCGGACAAGCGTGGTAAGCTGCCTCGCTGGATCCAGGAGCAC
CTGACCGACTCCAACCTCAACCTGACCGTGGATGAGGGTGTACAGGTCGCCAAGTACTTCCTGCGGCAGA
TGGCGCAGCCCTTCCACCGGGAGGATCAGCTGGGCCTGTCGCTGCTCAGCCTGGAGCAGCTGCAGTCAGA
GGAGACACTACAGCGAATTGAGCAGATCGCACAGCAGCTCTGA

Translation (760 aa):
MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQRAYPLEVTKL
IYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTAS
YVRAQYQQDASLPHCRFYEEFDIHGRQMPLPAGIYNLDDLKALGQRQGWCPYFLARYSILHANVVVYSYH
YLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQR
LRDEYRRLVEGLREASVARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVV
QESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP
FDDRTPTIANPVLHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCL
CPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILEN
IQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQS
RILKARLEYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEH
LTDSNLNLTVDEGVQVAKYFLRQMAQPFHREDQLGLSLLSLEQLQSEETLQRIEQIAQQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH