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Report for CCDS20504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20504.1 Public Mus musculus 6 C3ar1 23 108 98 CCDS HistoryNCBI Gene:12267Re-query CCDS DB by CCDS ID:20504.1Re-query CCDS DB by GeneID:12267See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20504.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042081.8 ENSMUSP00000048092.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042081.8Link to Ensembl Protein Viewer:ENSMUSP00000048092.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000042081Re-query CCDS DB by Protein ID:ENSMUSP00000048092
Original member Current member NCBI NM_009779.2 NP_033909.1 Accepted alive Link to Nucleotide Sequence:NM_009779.2Link to Protein Sequence:NP_033909.1Re-query CCDS DB by Nucleotide ID:NM_009779Re-query CCDS DB by Protein ID:NP_033909Link to BLAST:NP_033909.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033909.1 477 O09047 477 100% 0 0

Chromosomal Locations for CCDS 20504.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 122849823 122851256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1434 nt):
ATGGAGTCTTTCGATGCTGACACCAATTCAACTGACCTACACTCACGGCCTCTGTTTCAACCCCAAGACA
TT
GCCTCCATGGTCATTCTTGGTCTCACTTGTCTATTGGGACTGCTAGGCAATGGGCTGGTGCTGTGGGT
A
GCTGGCGTAAAGATGAAGACGACCGTGAACACAGTCTGGTTCCTCCATCTCACCCTGGCCGATTTCCTC
TGC
TGCCTCTCCTTGCCCTTCTCCTTGGCTCACCTGATTCTCCAAGGACACTGGCCCTATGGCTTGTTCC
TG
TGCAAACTTATCCCATCCATCATTATTCTCAACATGTTTGCCAGTGTCTTCCTGCTTACTGCCATTAG
C
CTGGACCGATGTCTGATAGTACATAAGCCAATCTGGTGCCAGAATCATCGAAACGTGAGAACCGCCTTC
GCC
ATCTGTGGATGTGTCTGGGTGGTAGCCTTTGTGATGTGTGTGCCCGTATTTGTATACCGTGATCTGT
TC
ATTATGGACAATCGCAGTATATGTAGATATAATTTTGATTCCTCCAGGTCATATGATTATTGGGACTA
C
GTGTACAAACTAAGTCTACCAGAAAGCAATTCTACTGATAACTCCACTGCTCAGCTAACTGGACATATG
AAT
GACAGGTCAGCTCCTTCCTCTGTACAGGCAAGGGATTACTTTTGGACAGTTACCACTGCCCTCCAGT
CA
CAGCCATTCCTAACATCTCCTGAAGACTCATTCTCTCTAGATTCAGCAAACCAACAACCCCATTATGG
T
GGAAAGCCTCCTAATGTCCTCACAGCCGCCGTACCCAGCGGGTTTCCTGTTGAAGATCGTAAATCCAAT
ACA
CTGAACGCTGACGCTTTTCTCTCTGCTCACACAGAACTTTTCCCTACTGCTTCTAGTGGTCATTTAT
AC
CCCTATGATTTCCAGGGGGATTATGTTGACCAATTCACGTATGACAATCATGTGCCGACACCGCTGAT
G
GCAATAACCATCACAAGGCTGGTGGTGGGCTTCCTGGTGCCGTTTTTCATCATGGTAATTTGTTACAGC
CTC
ATCGTCTTCAGAATGCGAAAAACCAACTTCACCAAGTCTCGGAACAAAACCTTTCGGGTGGCTGTGG
CT
GTGGTCACTGTCTTTTTTATCTGCTGGACTCCATACCATCTTGTCGGAGTCCTGCTATTGATTACTGA
T
CCAGAAAGTTCCTTGGGGGAAGCTGTGATGTCCTGGGACCACATGTCCATTGCTTTAGCATCTGCCAAT
AGT
TGCTTCAACCCTTTCCTGTATGCCCTCTTGGGGAAAGACTTTAGGAAGAAAGCAAGACAGTCTATAA
AG
GGCATTCTGGAAGCAGCCTTCAGCGAAGAGCTCACGCACTCTACCAACTGTACCCAAGACAAAGCCTC
T
TCAAAAAGAAACAATATGAGTACAGATGTGTGA


Translation (477 aa):
MESFDADTNSTDLHSRPLFQPQDIASMVILGLTCLLGLLGNGLVLWVAGVKMKTTVNTVWFLHLTLADFL
C
CLSLPFSLAHLILQGHWPYGLFLCKLIPSIIILNMFASVFLLTAISLDRCLIVHKPIWCQNHRNVRTAF
A
ICGCVWVVAFVMCVPVFVYRDLFIMDNRSICRYNFDSSRSYDYWDYVYKLSLPESNSTDNSTAQLTGHM
N
DRSAPSSVQARDYFWTVTTALQSQPFLTSPEDSFSLDSANQQPHYGGKPPNVLTAAVPSGFPVEDRKSN
T
LNADAFLSAHTELFPTASSGHLYPYDFQGDYVDQFTYDNHVPTPLMAITITRLVVGFLVPFFIMVICYS
L
IVFRMRKTNFTKSRNKTFRVAVAVVTVFFICWTPYHLVGVLLLITDPESSLGEAVMSWDHMSIALASAN
S
CFNPFLYALLGKDFRKKARQSIKGILEAAFSEELTHSTNCTQDKASSKRNNMSTDV




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 Genome Browser Links:   Ensembl Genome Browser
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