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Report for CCDS20496.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20496.1 Public Mus musculus 6 Mfap5 23 108 98 CCDS HistoryNCBI Gene:50530Re-query CCDS DB by CCDS ID:20496.1Re-query CCDS DB by GeneID:50530See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20496.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000148517.7 ENSMUSP00000122863.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000148517.7Link to Ensembl Protein Viewer:ENSMUSP00000122863.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000148517Re-query CCDS DB by Protein ID:ENSMUSP00000122863
Original member Current member NCBI NM_015776.3 NP_056591.1 Accepted alive Link to Nucleotide Sequence:NM_015776.3Link to Protein Sequence:NP_056591.1Re-query CCDS DB by Nucleotide ID:NM_015776Re-query CCDS DB by Protein ID:NP_056591Link to BLAST:NP_056591.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056591.1 164 Q9QZJ6 164 100% 0 0

Chromosomal Locations for CCDS 20496.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 122514343 122514400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122515348 122515383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122520579 122520611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122520896 122520928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122521893 122521928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122524487 122524510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122525951 122526038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122526787 122526860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122528319 122528431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (495 nt):
ATGCTGTTCTTGGGGCAGAAGGCCTTGCTGCTTGTCTTGGCAATCAGCATCCCCTCTGACTGGCTACCCC
TA
GGGGTCAGTGGTCAACGCGGAGATGATGTGCCTGAGACATTCACAGACGACCCTAATCTGGTGAACGA
T
CCCTCTACAGACGATACAGCTCTGGCTGATATCACACCTTCCACAGATGACCTAGCTGGTGACAAAAAT
GCT
ACTGCAGAGTGCCGGGATGAGAAGTTTGCTTGTACAAGACTGTACTCTGTCCATCGGCCAGTCAGAC
AG
TGTGTGCACCAGTCCTGCTTCACCAGTTTACGGCGCATGTACATCATCAATAATGAGATCTGTTCCCG
A
CTCGTCTGTAAAGAACATGAAGCTATGAAAGATGAGCTTTGCCGGCAGATGGCAGGCCTGCCTCCAAGG
CGA
CTTCGGCGCTCCAACTACTTCCGACTTCCTCCCTGTGAAAATATGAATTTGCAGAGACCCGATGGTC
TG
TGA


Translation (164 aa):
MLFLGQKALLLVLAISIPSDWLPLGVSGQRGDDVPETFTDDPNLVNDPSTDDTALADITPSTDDLAGDKN
A
TA
ECRDEKFACTRLYSVHRPVRQCVHQSCFTSLRRMYIINNEICSRLVCKEHEAMKDELCRQMAGLPPR
R
LRRSNYFRLPPCENMNLQRPDGL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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