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Report for CCDS20458.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20458.1 Public Mus musculus 6 Or6d15 23 108 98 CCDS HistoryNCBI Gene:258438Re-query CCDS DB by CCDS ID:20458.1Re-query CCDS DB by GeneID:258438See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20458.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061723.5 ENSMUSP00000052425.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061723.5Link to Ensembl Protein Viewer:ENSMUSP00000052425.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000061723Re-query CCDS DB by Protein ID:ENSMUSP00000052425
Original member Current member NCBI NM_146446.1 NP_666657.1 Accepted alive Link to Nucleotide Sequence:NM_146446.1Link to Protein Sequence:NP_666657.1Re-query CCDS DB by Nucleotide ID:NM_146446Re-query CCDS DB by Protein ID:NP_666657Link to BLAST:NP_666657.1

Chromosomal Locations for CCDS 20458.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116582012 116582944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGGAAACGGGACAACTGTCCAGGAATTTACCCTGGAGGGATTTCCTGCTGTCCAGCACCTGGGCAGAC
TTCTCTTCTCACTGAACCTGCTGGCATACCTGGCCTCCATCACCGGAAATGTCGTCATTGTCTCCATCAT
CTGCACCAGTACCCGTCTGAAAAGCCCCATGTACTTTTTCCTCGGTGTTTTCTCCTTTGGGGAGTCTTGT
TTTACAAGTGCTGTTATTCCCAAGTTGTTGGCTATATTTCTTTTAGGGAAACAAACAATTTCCTTTGTTG
CCTGTTTCATACAAACCTTTGTCACTCTATTTATCGGGGCATTCGGTTTTTTTCTCATAGCTGTGATGTC
AGTGGACAGGTGTGTAGCTATTTGCAAGCCTCTGCATTATCCCACCATCATGGACCTGAGGACCTGCATC
CTTCTAATTATGGCCTGCCTTGCTCTGACCTTCACCCTGATCACGTGGCTAGTAGTGACGGTATCACGGT
TATCCTTCTGTGGCCCCCACGTCATCCCCCACTTCTTCTGTGACATCAGCCCTCTGATCCACCTCTCTTG
CTCTGACACCAGTTCTGCTGAAGCTCTCACGTTCGCCCTTGCTTTGATTATTCTTTTCTCGTCTCTCATC
ATAACCACTATCGCATACAGCAACATAGTCATCACAATTGTGCGTCTCCCATCGGCTAAGGAGAGACAGA
GAGCTTTTTCCACCTGCTCATCCCACCTCATCGTCCTCTCTCTGATGTATGGCAGCTGTGTGTTTATATA
TGTGAAACCGAAGCAAATGAGCAGGCTTGAATCCAACCGAGAGGCTGCTCTTGTGAACACGGTAGTGACG
CCGCTTCTGAACCCCGTCATCTACACCCTGCGTAACAAGCAGGTCCATCAGGCTCTGAGGGAGACTCTGA
GCAGAATAAAAATATCAGGATAG

Translation (310 aa):
MGNGTTVQEFTLEGFPAVQHLGRLLFSLNLLAYLASITGNVVIVSIICTSTRLKSPMYFFLGVFSFGESC
FTSAVIPKLLAIFLLGKQTISFVACFIQTFVTLFIGAFGFFLIAVMSVDRCVAICKPLHYPTIMDLRTCI
LLIMACLALTFTLITWLVVTVSRLSFCGPHVIPHFFCDISPLIHLSCSDTSSAEALTFALALIILFSSLI
ITTIAYSNIVITIVRLPSAKERQRAFSTCSSHLIVLSLMYGSCVFIYVKPKQMSRLESNREAALVNTVVT
PLLNPVIYTLRNKQVHQALRETLSRIKISG


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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