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Report for CCDS20377.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20377.1 Public Mus musculus 6 Magi1 23 108 98 CCDS HistoryNCBI Gene:14924Re-query CCDS DB by CCDS ID:20377.1Re-query CCDS DB by GeneID:14924See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20377.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089317.11 ENSMUSP00000086730.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089317.11Link to Ensembl Protein Viewer:ENSMUSP00000086730.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000089317Re-query CCDS DB by Protein ID:ENSMUSP00000086730
Original member NCBI NM_001029850.4 NP_001025021.1 Updated not alive Link to Nucleotide Sequence:NM_001029850.4Link to Protein Sequence:NP_001025021.1Re-query CCDS DB by Nucleotide ID:NM_001029850Re-query CCDS DB by Protein ID:NP_001025021
Current member NCBI NM_001029850.5 NP_001025021.1 Accepted alive Link to Nucleotide Sequence:NM_001029850.5Link to Protein Sequence:NP_001025021.1Re-query CCDS DB by Nucleotide ID:NM_001029850Re-query CCDS DB by Protein ID:NP_001025021Link to BLAST:NP_001025021.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025021.1 1471 Q6RHR9-1 1471 100% 0 0

Chromosomal Locations for CCDS 20377.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 93678248 93679002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93682952 93683090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93685554 93685697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93686577 93686637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93686782 93686875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93694008 93694175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93697194 93697487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93699616 93699808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93701290 93701381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93704277 93704360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93708004 93708220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93717240 93717271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93745434 93746054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93747192 93747374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93755014 93755106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93757655 93757764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93760708 93760765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93769508 93769543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93773607 93773689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93785445 93785646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93792347 93792553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93815706 93815825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93943204 93943320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 94283010 94283322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4416 nt):
ATGTCGAAAGTGATCCAGAAGAAGAACCACTGGACTGGCCGCGTTCACGAGTGCACCGTGAAGCGGGGAC
CCCAGGGCGAGCTGGGGGTGACGGTCCTGGGGGGCGCGGAGCATGGGGAGTTTCCGTACGTGGGGGCGGT
GGCGGCGGCCGAGGCGGCGGGGCTTCCCGGCGGTGGCGAGGGGCCGAAGCTGGCCGAAGGTGAGCTGCTG
CTGGAGGTGCAGGGGGTCCGGGTGTCCGGCTTGCCCCGCTATGACGTGCTGGGAGTCATCGACAGCTGCA
AGGAGGCCGTCACCTTCAAAGCCGTCAGACAAGGAGGAAGGCTCAACAAGGACCTACGACATTTCCTCAA
CCAACGGTTCCAGAAGGGGTCTCCAGATCATGAGCTCCAGCAGACCATAAGGGACAACCTCTACCGCCAT
GCTGTGCCTTGCACAACCCGGTCTCCCAGAGAAGGAGAAGTGCCTGGTGTGGATTACAGCTTTCTGACTG
TGAAGGAGTTCTTGGACCTCGAGCAGAGCGGGACCCTGTTGGAAGTCGGCACCTATGAAGGAAACTATTA
TGGGACACCCAAACCTCCTAGCCAGCCAGTCAGTGGGAAAGTGATCACGACGGATGCCTTGCACAGCCTG
CAGTCTGGCTCCAAGCAGTCGACCCCTAAGCGAACAAAGTCCTACAATGATATGCAAAATGCTGGCATAG
TCCACCCGGAGAATGAGGAGGAGGAGGATGTCCCTGAAATGAACAGTAGCTTTACAGCCGACTCTGGAGA
CCAGGACGAGCACACTCTCCAAGAAGCAACGCTCCCGCCTGTGAATAGTAGCATCCTCGCTGCTCCCATC
ACGGACCCTTCTCAGAAGTTCCCTCAGTACCTACCTCTTTCTGCAGAGGATAATTTAGGTCCTCTACCTG
AAAACTGGGAGATGGCCTATACTGAAAATGGAGAAGTCTATTTCATAGACCACAACACGAAAACAACATC
ATGGTTAGACCCTCGGTGCCTGAACAAACAGCAGAAGCCTCTGGAAGAATGTGAAGATGATGAAGGGGTA
CACACCGAGGAGCTGGACAGTGAACTAGAGTTGCCTGCTGGCTGGGAAAAGATTGAAGACCCTGTCTACG
GTGTCTACTATGTAGACCACATCAACAGGAAGACGCAATATGAAAACCCAGTCCTAGAAGCCAAACGGAA
GAAACAGCTTGAACAGCAGCAGCAACAGCAGCAGCCTCAGCCACCGCAGCCAGAAGAGTGGACAGAGGAT
CATGCATCTGTTGTGCCTCCTGTTGCTCCTTCCCATCCCCCGAGCAATCCGGAGCCAGCCAGGGAAACTC
CACTTCAGGGCAAACCTTTTTTTACAAGAAACCCCTCTGAGCTGAAAGGCAAGTTCATTCACACGAAGCT
ACGGAAAAGCAGCCGAGGCTTTGGCTTCACGGTGGTTGGAGGAGACGAGCCTGATGAGTTCCTGCAGATC
AAGAGCCTCGTCCTCGATGGTCCTGCCGCACTGGATGGCAAGATGGAGACAGGGGATGTAATTGTGAGTG
TGAATGACACCTGTGTTTTGGGACACACACATGCTCAAGTTGTGAAAATCTTCCAGTCCATTCCCATTGG
TGCCAGTGTGGACCTTGAACTCTGCAGAGGTTATCCATTGCCTTTTGACCCGGATGACCCTAATACAAGT
TTAGTGACCTCGGTGGCCATTTTGGACAAAGAACCAATTATTGTAAATGGACAAGAGACCTACGATTCAC
CAGCGAGCCACAGTAGTAAAACAGGCAAAGTCAGCAGCATGAAGGATGCCAGGCCAAGCAGCCCTGCTGA
TGTGGCTTCCAACAGCTCTCATGGTTATCCCAACGACACAGTCTCCTTGGCTTCCTCCATAGCCACCCAG
CCAGAGCTAATAACTGTTCACATAGTCAAAGGGCCAATGGGATTTGGCTTTACGATCGCAGACAGTCCCG
GTGGGGGTGGCCAAAGAGTGAAACAGATTGTTGACAGTCCACGCTGCAGAGGCCTCAAAGAAGGGGATCT
TATCGTGGAGGTGAATAAGAAGAACGTGCAGGCCCTGACGCACAATCAAGTCGTGGATATGCTGATTGAA
TGTCCCAAGGGAAGTGAGGTCACACTGTTGGTGCAGCGAGGAGGGCTACCAGTTCCCAAGAAGAGCCCAA
AGTCGCAGCCACTGGAGAGGAAAGACAGCCAGAATAGCTCCCAGCACAGCGTCTCCAGCCACCGGAGCCT
GCACACTGCGTCCCCGAGCCACGGCATACAGGTGCTCCCTGAGTACCTACCTGCAGACGCCCCTGCTCCA
GATCAGACCGACAGCTCTGGGCAGAAAAAGCCAGATCCTTTTAAAATCTGGGCCCAGTCCAGGAGCATGT
ATGAAAACCGACCTATGTCACCTTCGCCTGCATCAGGATTGAGCAAGGGTGAAAGAGACAGAGAAATCAA
TTCCACGAATTTTGGAGAATGTCAGATTCCAGATTACCAGGAACAGGACATCTTCCTCTGGAGAAAAGAA
ACCGGATTTGGATTTAGGATTCTGGGTGGAAATGAACCAGGGGAACCCATTTATATCGGTCACATCGTAC
CGCTGGGTGCTGCTGACACAGACGGCCGCCTGAGGTCTGGAGATGAATTAATCTGTGTGGATGGGACACC
AGTAATTGGGAAATCACACCAGCTCGTGGTCCAGCTTATGCAACAAGCTGCCAAGCAAGGCCATGTCAAT
CTCACAGTGAGGCGGAAAGTGGTCTTTGCCGTCCCCAAAGCAGAGAATGAGGTGCCCTCACCAGCCTCAT
CACACCACAGTAGCAACCAGCCCGCGTCCCTGACGGAGGAGAAACGCACACCGCAAGGCAGCCAGAACTC
TCTGAACACTGTGAGCTCTGGCAGCGGCAGCACCAGTGGCATTGGCAGTGGTGGCGGCGGGGGCAGCGGT
GTGGTGAGCGCTGTGCTGCAGCCCTATGATGTGGAGATTCGGCGTGGGGAGAACGAGGGCTTTGGGTTTG
TCATCGTGTCCTCCGTGAGCAGACCCGAAGCGGGCACAACCTTCGGTCGGATTATTGAGGGGAGCCCTGC
TGACCGCTGTGGCAAGCTGAAAGTAGGAGACCGGATCTTGGCAGTAAATGGATGTTCCATCACCAACAAA
TCCCATTCTGACATTGTCAACCTAATCAAAGAAGCGGGCAACACAGTGACTCTCCGCATCATCCCCGGGG
ATGAGTCCTCAAATGCCACGCTGCTGACTAATGCTGAGAAGATTGCCACCATCACCACCACTCATGCCCC
CTCTCAGCAGGGGACCCAGGAAACAAGGACCACCACCAAACCAAAGCAGGATTCTCAGTTTGAGTTCAAA
GGACCGCAGGCTGCACAGGAGCAAGATTTCTACACTGTGGAATTGGAAAGAGGGGCCAAGGGATTTGGCT
TTAGTCTTCGAGGGGGCCGAGAATATAACATGGATCTTTATGTTCTGCGCTTGGCAGAGGATGGTCCTGC
AGAAAGATGTGGGAAGATGAGGATTGGCGATGAAATTCTAGAGATCAATGGTGAGACCACCAAAAACATG
AAACACTCTCGGGCCATAGAACTGATCAAGAATGGCGGCCGCAGGGTCCGTCTGTTTCTGCGGCGGGGAG
ACGGCTCAGTCCCAGAATATGACCCCAGCAGCGACAGGAACGGCCCCTCCACCGGTGCACAAGGTGTTCC
GGAAGTGAGGCCGGGGCCGCCAGACCACAGACCGCATCCAGCCTTGGAGTCCAGTTACCCACCCGAACTT
CACAAATCATCACAACATGCCGAAAAGCGAGCACACGCGAAGGATCCAAAAGGCAACAGGGAGCACAGCA
AACAACCCAACGAACATCACACCTGGAATGGAACTTCTAGAAAACAGGACAGCGGGGCATGCCGGCCCAA
AGACCGGCCACCCGACGCATGGAGAGAGGCGCAGCCAGAGCGGACAGCCACCAATGGTTCAAAGAGGAGG
TCACCGGAGAAGCGCAGGGAAGGCACCCGCAGCGCTGACAACACTTTGGAAAGAAGGGAGAAGCATGAGA
AGAGAAGAGAGATATCTCCCGAGAGGAAGCGAGAGCGTTCACCCACCCGGAGAAAAGATAGCTCCCCGAG
CCGCCGGCGGAGGTCCCTCGAAAGACTCCTGGATCAAAGACGGTCCCCAGAGCGCAGAAGAGGGGGCTCC
CCCGAGAGGAGAGCCAAATCCACCGACAGGAGGAGGGCCAGGTCCCCTGAGCGCAGGCGAGAGCGGTCAC
TGGACAAAAGGAACCGGGACGACAAGGTTGGCCACCGAGAAAGAGAGGAGGCTGGTCTGAAGCTGGAAGC
GGGGAGAAGCCCCCGAAATCCCCCAGAGCAGAGAAGGCGGCCTTACAAAGAATGTAGCACCGACCTCAGC
ATCTGA

Translation (1471 aa):
MSKVIQKKNHWTGRVHECTVKRGPQGELGVTVLGGAEHGEFPYVGAVAAAEAAGLPGGGEGPKLAEGELL
LEVQGVRVSGLPRYDVLGVIDSCKEAVTFKAVRQGGRLNKDLRHFLNQRFQKGSPDHELQQTIRDNLYRH
AVPCTTRSPREGEVPGVDYSFLTVKEFLDLEQSGTLLEVGTYEGNYYGTPKPPSQPVSGKVITTDALHSL
QSGSKQSTPKRTKSYNDMQNAGIVHPENEEEEDVPEMNSSFTADSGDQDEHTLQEATLPPVNSSILAAPI
TDPSQKFPQYLPLSAEDNLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLNKQQKPLEECEDDEGV
HTEELDSELELPAGWEKIEDPVYGVYYVDHINRKTQYENPVLEAKRKKQLEQQQQQQQPQPPQPEEWTED
HASVVPPVAPSHPPSNPEPARETPLQGKPFFTRNPSELKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQI
KSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDDPNTS
LVTSVAILDKEPIIVNGQETYDSPASHSSKTGKVSSMKDARPSSPADVASNSSHGYPNDTVSLASSIATQ
PELITVHIVKGPMGFGFTIADSPGGGGQRVKQIVDSPRCRGLKEGDLIVEVNKKNVQALTHNQVVDMLIE
CPKGSEVTLLVQRGGLPVPKKSPKSQPLERKDSQNSSQHSVSSHRSLHTASPSHGIQVLPEYLPADAPAP
DQTDSSGQKKPDPFKIWAQSRSMYENRPMSPSPASGLSKGERDREINSTNFGECQIPDYQEQDIFLWRKE
TGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELICVDGTPVIGKSHQLVVQLMQQAAKQGHVN
LTVRRKVVFAVPKAENEVPSPASSHHSSNQPASLTEEKRTPQGSQNSLNTVSSGSGSTSGIGSGGGGGSG
VVSAVLQPYDVEIRRGENEGFGFVIVSSVSRPEAGTTFGRIIEGSPADRCGKLKVGDRILAVNGCSITNK
SHSDIVNLIKEAGNTVTLRIIPGDESSNATLLTNAEKIATITTTHAPSQQGTQETRTTTKPKQDSQFEFK
GPQAAQEQDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERCGKMRIGDEILEINGETTKNM
KHSRAIELIKNGGRRVRLFLRRGDGSVPEYDPSSDRNGPSTGAQGVPEVRPGPPDHRPHPALESSYPPEL
HKSSQHAEKRAHAKDPKGNREHSKQPNEHHTWNGTSRKQDSGACRPKDRPPDAWREAQPERTATNGSKRR
SPEKRREGTRSADNTLERREKHEKRREISPERKRERSPTRRKDSSPSRRRRSLERLLDQRRSPERRRGGS
PERRAKSTDRRRARSPERRRERSLDKRNRDDKVGHREREEAGLKLEAGRSPRNPPEQRRRPYKECSTDLS
I


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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