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Report for CCDS20236.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20236.1 Public Mus musculus 6 Polr1a 23 108 98 CCDS HistoryNCBI Gene:20019Re-query CCDS DB by CCDS ID:20236.1Re-query CCDS DB by GeneID:20019See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20236.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055296.10 ENSMUSP00000060858.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055296.10Link to Ensembl Protein Viewer:ENSMUSP00000060858.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000055296Re-query CCDS DB by Protein ID:ENSMUSP00000060858
Original member Current member NCBI NM_009088.3 NP_033114.3 Accepted alive Link to Nucleotide Sequence:NM_009088.3Link to Protein Sequence:NP_033114.3Re-query CCDS DB by Nucleotide ID:NM_009088Re-query CCDS DB by Protein ID:NP_033114Link to BLAST:NP_033114.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033114.3 1717 O35134 1717 100% 0 0

Chromosomal Locations for CCDS 20236.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 71909163 71909239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71912876 71913080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71915021 71915170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71917742 71917849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71920442 71920527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71920649 71920752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71924590 71924697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71926284 71926389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71926649 71926811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71929309 71929479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71929665 71929787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71931594 71931824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71936296 71936550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71941347 71941538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71948350 71948499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71949340 71949523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71950580 71950662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71950763 71950921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71952986 71953084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71954693 71954845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71961524 71961606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71963674 71963839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71964666 71964887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71965556 71965770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71966376 71966543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71967312 71967447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71967859 71968016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71972698 71972824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71974101 71974211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71974744 71975019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71976019 71976219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71977334 71977451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71977944 71978108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 71978415 71978515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5154 nt):
ATGCTGGCCTCCAAGCACACACCATGGAGGCGGCTTCAGGGCATTTCCTTCGGAATGTATTCGGCCGAAG
AGCTCAAGAAGTTAAGTGTTAAATCCATTACAAATCCTCGATACGTGGACTACCTGGGAAACCCTTCAGC
AAATGGCCTGTATGATTTGGCTTTGGGTCCTGCAGATTCCAAAGAAGTATGCGCTACCTGCGTGCAGGAC
TTCAACAACTGCTCTGGACACCTGGGCCACATTGATCTCCCGCTCACAGTCTACAACCCTTTCCTCTTTG
ATAAACTCTACCTGCTGCTTCGAGGCTCCTGTTTGAGTTGCCACATGCTGACTTGTCCTCGGGCTGCAAT
TTACCTGTTGATCTCCCAGCTGAGGGTCCTGGAAGTTGGAGCCCTGCAAGCAGTCTACGAGCTTGAGCGA
ATTCTCAGCAGGTTTCTGGAAGAAACTGGAGATCCTTCCGCCTTCGAAATTCAAGAAGAGTTAGAAGAAT
ACACAAGCAAAATTCTGCAGAACAACCTCTTGGGGTCCCAGGGCACACATGTGAAAAATGTGTGCGAGAG
CAGAAGCAAACTTGTCGCTCAGTTCTGGAAGACACACATGGCTGCGAAGCAGTGTCCACACTGCAAGACG
GGACGGTCGGTGGTTCGAAAGGAGCACAATAGTAAACTAATCATCACATACCCAGCCACGGTGCACAAGA
AATCAGACCAGGAGGGCACAGAACTCCCAGAAGGAGTGCCGGAAGCTCCAGGAATTGACAAGGCTCAGAT
GGGGAAACGAGGGTACCTGACCCCAAGCAGCGCCCAAGAACACCTTTTCGCCATTTGGAAGAATGAAGGA
TTCTTTCTGAATTATCTTTTTTCGGGATTGGATGATATTGGCCCAGAGTCCAGTTTCAACCCCAGTATGT
TCTTTCTAGACTTCATAGTCGTACCGCCATCCAGGTACCGTCCCGTCAATCGCCTGGGTGACCAGATGTT
CACTAATGGCCAGACAGTAAACTTGCAAGCTGTCATGAAGGATGCAGTTTTGATCCGGAAACTTCTGGCG
TTGATGGCCCAAGAACAGAAACTGCCCTGTGAGATGACAGAACTCACCATAGACAAGGAAAATGACTCCT
CAGTGGCTATCGACCGATCCTTCCTGGGTTTGCTTCCAGGCCCGTCTCTCACAGATAAACTTTACAACAT
TTGGATTCGCCTTCAGAGCCACGTCAATATTGTGTTTGACAGTGAGATGGACAAATTGATGTTGGAAAAG
TACCCTGGCATAAGACAGATCCTAGAGAAGAAGGAAGGCCTGTTCCGGAAGCACATGATGGGAAAGCGAG
TTGACTACGCAGCCCGCTCGGTCATCTGCCCAGACATGTACATCAACACCAATGAGATCGGAATCCCCAT
GGTATTTGCCACAAAACTGACTTACCCTCAGCCAGTTACCCCCTGGAACGTGCAGGAACTGAGACAGGCA
GTCATCAATGGACCCAATGTGCACCCAGGAGCCTCCATGGTCATCAACGAGGATGGCAGTCGCACAGCCC
TGAGCTCAGTGGATGCTGCGCAGCGGGAAGCTGTGGCCAAACAGCTCCTGACACCAGCCACAGGGGCTCC
GAAGCCTCAGGGGACAAAAGTTGTGTGCCGGCATGTGAAAAATGGGGACATCCTCCTCCTGAACCGACAG
CCTACCTTGCACAGACCCTCCATCCAGGCCCACCGTGCCCGCATTCTGCCTGAAGAAAAAGTCCTACGCC
TTCACTATGCCAACTGCAAGGCCTACAATGCTGACTTTGATGGAGATGAGATGAACGCCCACTTCCCCCA
GAGTGAGTTGGGCCGAGCTGAAGCCTATGTCCTGGCCTGCACTGATCAGCAGTATCTTGTTCCCAAGGAT
GGCCAGCCATTGGCAGGACTGATCCAAGATCACATGGTTTCAGGTGCAAACATGACCATTCGGGGATGCT
TTTTCACCCGGGAACAGTACATGGAACTGGTGTACCGAGGGCTCACAGACAAAGTGGGACGCGTGAAGCT
CTTTCCTCCCGCCATCCTGAAGCCCTTCCCACTGTGGACAGGAAAACAGGTTGTGTCGACCCTCCTCATA
AACATAATTCCAGAGGACTACGCCCCCCTGAACTTATCTGGAAAGGCAAAAATTGGCAGCAAAGCCTGGG
TGAAGGAAAAGCCACGGCCTATCCCTGACTTTGACCCGGACTCCATGTGTGAGTCCCAGGTGATCATCAG
GGAAGGAGAGCTGCTCTGCGGAGTGCTGGACAAGGCACACTATGGGAGCTCTGCCTACGGCCTGGTCCAC
TGCTGCTATGAGATCTATGGGGGTGAGACCAGCGGCAGGGTTCTCACCTGCCTAGCCCGCCTCTTCACTG
CCTACCTCCAGCTCTATAGAGGTTTCACCTTGGGTGTAGAAGACATTTTGGTTAAGCCAAATGCAGATGT
GGTGAGACAGCGTATCATTGAAGAATCTACCCAGTGTGGACCCCAGGCTGTCAAGGCTGCATTGAGCCTG
CCAGAAACTGCATCATGTGATGAAATCCAAGGGAAATGGCAGGATGCCCATCTGAGCAAAGACCAGAGGG
ATTTTAACATGATTGATATGAAGTTCAAGGAGGAAGTGAACCATTACAGCAATGAGATTAACAAGGCATG
TATGCCTCTTGGCTTGCACAGACAGTTCCCCGAAAACAACCTGCAGATGATGGTGCAGTCAGGAGCCAAA
GGGTCAACCGTGAACACGATGCAAATCTCTTGCCTGCTGGGCCAAATTGAATTGGAAGGTCGGAGACCCC
CACTGATGGCGTCTGGCAAGTCACTGCCCTGCTTTGAGCCTTACGAGTTCACCCCCAGGGCTGGTGGCTT
TGTCACTGGAAGGTTTCTTACCGGTATCAGGCCTCCTGAGTTCTTCTTCCACTGCATGGCAGGACGAGAA
GGCCTGGTGGACACTGCTGTCAAAACCAGCCGTTCTGGCTATCTCCAAAGGTGTATCATCAAGCACCTGG
AGGGGCTGGTCATCCAGTACGATCTGACGGTCCGTGACAGCGATGGCAGCGTGGTCCAGTTCCTGTATGG
GGAGGACGGCCTGGACATCCCCAAGACACAGTTCCTACAGCCCAAGCAGTTCCCCTTTCTGGCCGGCAAT
TATGAGGTGATAATGAAATCCAAGCATCTTCATGAAGTTTTATCCAGAGCAGATCCCCAGAAAGTGCTCG
GCCACATCAAAGCCATTAAAAAATGGCATCACAAGCATTCCGGTGCCCTGCTGAGGAAAGGCGCCTTCCT
CAGTTTTTCCCAGAAGATCCAGGCAGCTGTGAAAGCTTTGAACCTAAAGGGCAGTATCCAGAATGGCCGC
AGCCCCGAGACCCAGCAGATGTTACAGATGTGGTATGACTTGGATGAAGAGAGCCGATGGAAATACCAGA
AGAGGGCTGCCCCTTGTCCCGACCCTAGCCTTTCTGTGTGGCGCCCAGACATCTACTTTGCATCTGTGTC
TGAAACATTTGAAAAGAAGATTGATGACTTCAGTCAGGAATGGGCAGCTCAAGCAGAGAGGAGTTACAAG
AAATCAGAGCTTTCCCTCGACAGGCTGAGAACCTTACTGCAGCTGAAGTGGCAGCGCTCACTGTGTGACC
CAGGCGAGGCTGTTGGCCTCCTGGCTGCCCAGAGCATCGGAGAGCCCTCCACACAGATGACACTGAACAC
CTTCCACTTTGCAGGCAGAGGCGAGATGAACGTCACCCTGGGCATTCCAAGATTGAGGGAGATTCTCATG
GTGGCCAGTGCCAACATCAAAACGCCCATGATGAGTGTGCCTGTGTTCGACACCAAGAAAGCATTGAAGA
AAGTGAAGAGTCTAAAGAAGAGGCTCACCAGAGTGTGCCTGGGGGAGGTATTGCAGAAAGTTGACATCCA
GGAGTCCTTCTGTATGGGAGAAAAACGGAATAAGTTCCAGGTGTATGAGCTCCGGTTTCAGTTCCTGCCA
CATGCATATTACCAGCAGGAGAAGTGCCTGAGACCCGAGGACATCTTGCACTTCATGGAAACCAGATTCT
TTAAGCTACTAATGGAAGCTATCAAAAAGAAGAAAAACAAAGCATCAGCCTTCAGAAATGTGAATTCGAG
GAGAGCTACACAGAAGGACCTCAATGACACTGAGGACTCGGGGAGGAGTCAGAGAGAGGAGGAAAGGGAT
GAGGAAGAGGAGGGGAACATTGTGGATGCTGAAGCTGAGGAGGGCGATGCAGACGCTTCTGACACCAAAC
GCAAGGAGAAGCAAGAAGAAGAGGTTGACTATGAGAGTGAGGAAGAAGGAGAGGAGGAAGAGGAGGAGGA
GGTACAAGAAGAAGGGAACATCAAAGGCGACGGTGTCCACCAGGGCCATGAGCCAGATGAGGAAGAACAT
TTAGGCCTCGAGGAGGAGGAGTCATCCCAGAAGCCTCCCCGCCGCCACTCCAGGCCTCAGGGAGCTGAGG
CCATAAAACGCCGGATCCAGGCTGTACGGGAGTCCTACTCGTTCATCGAGGACTACCAGTATGACACAGA
GGAGAGCCTGTGGTGTCAGGTGACTGTGAAGCTCCCACTGATGAAGATTAATTTTGACATGAGCTCCTTG
GTTGTGTCCTTGGCCCACAAAGCCATTGTCTATACGACCAAGGGCATCACTCGGTGCCTCCTGAACGAAA
CGACCAACAGTAAGAATGAGAAGGAGCTTGTACTGAACACGGAGGGAATCAACCTTCCCGAGCTGTTCAA
GTACTCCGAGATACTGGACCTGCGCCGCCTCTACTCCAATGACATCCACGCCATGGCCAATACTTATGGC
ATCGAGGCTGCGTTGCGGGTGATAGAGAAGGAGATTAAAGATGTGTTTGCTGTGTATGGCATTGCAGTTG
ATCCTCGCCATCTCTCCCTGGTGGCTGATTACATGTGTTTTGAGGGGGTTTATAAGCCACTCAATCGCTT
TGGGATCCAGTCAAGCTCCTCCCCTTTGCAGCAGATGACATTTGAAACCAGCTTCCAGTTTCTGAAACAG
GCCACCATGATGGGATCCCATGATGAACTCAAGTCACCTTCCGCCTGCCTCGTGGTGGGAAAGGTTGTCA
AAGGCGGGACAGGCCTGTTTGAGCTCAAGCAGCCCCTAAGATAG

Translation (1717 aa):
MLASKHTPWRRLQGISFGMYSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSKEVCATCVQD
FNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHMLTCPRAAIYLLISQLRVLEVGALQAVYELER
ILSRFLEETGDPSAFEIQEELEEYTSKILQNNLLGSQGTHVKNVCESRSKLVAQFWKTHMAAKQCPHCKT
GRSVVRKEHNSKLIITYPATVHKKSDQEGTELPEGVPEAPGIDKAQMGKRGYLTPSSAQEHLFAIWKNEG
FFLNYLFSGLDDIGPESSFNPSMFFLDFIVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDAVLIRKLLA
LMAQEQKLPCEMTELTIDKENDSSVAIDRSFLGLLPGPSLTDKLYNIWIRLQSHVNIVFDSEMDKLMLEK
YPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQA
VINGPNVHPGASMVINEDGSRTALSSVDAAQREAVAKQLLTPATGAPKPQGTKVVCRHVKNGDILLLNRQ
PTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKD
GQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLI
NIIPEDYAPLNLSGKAKIGSKAWVKEKPRPIPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVH
CCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVVRQRIIEESTQCGPQAVKAALSL
PETASCDEIQGKWQDAHLSKDQRDFNMIDMKFKEEVNHYSNEINKACMPLGLHRQFPENNLQMMVQSGAK
GSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGRE
GLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLAGN
YEVIMKSKHLHEVLSRADPQKVLGHIKAIKKWHHKHSGALLRKGAFLSFSQKIQAAVKALNLKGSIQNGR
SPETQQMLQMWYDLDEESRWKYQKRAAPCPDPSLSVWRPDIYFASVSETFEKKIDDFSQEWAAQAERSYK
KSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILM
VASANIKTPMMSVPVFDTKKALKKVKSLKKRLTRVCLGEVLQKVDIQESFCMGEKRNKFQVYELRFQFLP
HAYYQQEKCLRPEDILHFMETRFFKLLMEAIKKKKNKASAFRNVNSRRATQKDLNDTEDSGRSQREEERD
EEEEGNIVDAEAEEGDADASDTKRKEKQEEEVDYESEEEGEEEEEEEVQEEGNIKGDGVHQGHEPDEEEH
LGLEEEESSQKPPRRHSRPQGAEAIKRRIQAVRESYSFIEDYQYDTEESLWCQVTVKLPLMKINFDMSSL
VVSLAHKAIVYTTKGITRCLLNETTNSKNEKELVLNTEGINLPELFKYSEILDLRRLYSNDIHAMANTYG
IEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIQSSSSPLQQMTFETSFQFLKQ
ATMMGSHDELKSPSACLVVGKVVKGGTGLFELKQPLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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