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Report for CCDS20146.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20146.1 Public Mus musculus 6 Hoxa9 23 108 98 CCDS HistoryNCBI Gene:15405Re-query CCDS DB by CCDS ID:20146.1Re-query CCDS DB by GeneID:15405See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20146.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048680.7 ENSMUSP00000046939.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048680.7Link to Ensembl Protein Viewer:ENSMUSP00000046939.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000048680Re-query CCDS DB by Protein ID:ENSMUSP00000046939
Original member NCBI NM_010456.3 NP_034586.1 Updated not alive Link to Nucleotide Sequence:NM_010456.3Link to Protein Sequence:NP_034586.1Re-query CCDS DB by Nucleotide ID:NM_010456Re-query CCDS DB by Protein ID:NP_034586
Current member NCBI NM_010456.4 NP_034586.1 Accepted alive Link to Nucleotide Sequence:NM_010456.4Link to Protein Sequence:NP_034586.1Re-query CCDS DB by Nucleotide ID:NM_010456Re-query CCDS DB by Protein ID:NP_034586Link to BLAST:NP_034586.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034586.1 271 P09631-1 271 100% 0 0

Chromosomal Locations for CCDS 20146.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 52224244 52224482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52225528 52226104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGGCCACCACCGGGGCCCTGGGCAACTACTATGTGGACTCCTTCCTGCTGGGCGCCGACGCTGCTGATG
AGCTGGGTGCGGGACGCTACGCTCCAGGGACCCTGGGTCAACCCCCAAGGCAGGCGGCAGCTCTGGCCGA
ACACCCCGACTTCAGTCCTTGCAGCTTCCAGTCCAAGGCGGCGGTGTTTGGTGCCTCGTGGAACCCAGTG
CACGCGGCGGGCGCCAATGCGGTGCCTGCTGCAGTGTATCATCACCACCACCACCCCTACGTGCATCCCC
AGGCGCCCGTGGCGGCGGCGGCGCCGGACGGCAGGTATATGCGCTCCTGGCTGGAACCCACGCCCGGTGC
GCTCTCCTTCGCGGGCTTACCCTCCAGCCGGCCTTATGGCATTAAACCTGAACCGCTCTCGGCCAGAAGG
GGTGACTGTCCCACGCTTGACACTCACACTTTGTCCCTGACTGACTATGCTTGTGGTTCTCCTCCAGTTG
ATAGAGAAAAACAACCCAGCGAAGGCGCCTTCTCCGAAAACAATGCCGAGAATGAGAGCGGCGGAGACAA
GCCCCCCATCGATCCCAATAACCCGGCTGCCAACTGGCTACATGCTCGCTCCACTCGGAAGAAGCGATGC
CCCTACACAAAACACCAGACGCTGGAACTGGAGAAGGAGTTTCTGTTTAACATGTACCTCACACGGGACC
GCAGGTACGAGGTGGCCCGGCTGCTCAACCTCACCGAAAGGCAGGTCAAGATCTGGTTCCAGAACCGCAG
GATGAAAATGAAGAAAATCAACAAGGACCGAGCAAAAGACGAGTGA

Translation (271 aa):
MATTGALGNYYVDSFLLGADAADELGAGRYAPGTLGQPPRQAAALAEHPDFSPCSFQSKAAVFGASWNPV
HAAGANAVPAAVYHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALSFAGLPSSRPYGIKPEPLSARR
GDCPTLDTHTLSLTDYACGSPPVDREKQPSEGAFSENNAENESGGDKPPIDPNNPAANWLHARSTRKKRC
PYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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