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Report for CCDS19964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19964.1 Public Mus musculus 6 Tspan33 23 108 98 CCDS HistoryNCBI Gene:232670Re-query CCDS DB by CCDS ID:19964.1Re-query CCDS DB by GeneID:232670See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19964.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046750.13 ENSMUSP00000045282.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046750.13Link to Ensembl Protein Viewer:ENSMUSP00000045282.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000046750Re-query CCDS DB by Protein ID:ENSMUSP00000045282
Original member Current member NCBI NM_146173.3 NP_666285.1 Accepted alive Link to Nucleotide Sequence:NM_146173.3Link to Protein Sequence:NP_666285.1Re-query CCDS DB by Nucleotide ID:NM_146173Re-query CCDS DB by Protein ID:NP_666285Link to BLAST:NP_666285.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666285.1 283 Q8R3S2-1 283 100% 0 0

Chromosomal Locations for CCDS 19964.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 29694443 29694544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29709941 29709998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29710587 29710714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29711016 29711090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29713439 29713534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29716705 29716833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29717190 29717351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29717537 29717638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGGCGCGGAGACCTGGCGTGCCGGCTGCCTACGGGGACGAGTTCTCCTTCGTCAGCCCGCTGGTGAAAT
ACCTGCTCTTCTTCTTCAACATGCTCTTCTGGGTAATCTCCATGGTCATGGTGGCCGTGGGTGTCTATGC
CAGGCTAATGAAGCACGCAGAAGCAGCCTTGGCTTGTCTGGCGGTGGACCCTGCTATCCTGCTGATCGTG
GTGGGCGTCCTCATGTTCCTGCTCACCTTCTGCGGCTGTATCGGATCCCTTCGGGAGAACATCTGCCTTC
TGCAGACGTTCTCCCTCTGCCTCACCATCGTGTTCCTGCTGCAGCTGGCTGCTGGCATCCTGGGCTTCGT
CTTCTCAGACAAGGCTCGGGGGAAAGTGAGCGAGATCATCAACAATGCTATCGTGCATTATCGAGATGAC
CTGGATCTGCAGAACCTCATCGACTTTGGCCAGAAGAAGTTCAGCTGCTGTGGAGGGATCTCCTACAGAG
ACTGGTCTCAGAATATGTACTTCAACTGCTCGGAGGACAACCCTAGCCGGGAGCGCTGCTCTGTGCCTTA
TTCCTGTTGCTTGCCCACCCCCAACCAGGCAGTGATCAACACGATGTGTGGCCAAGGTATGCAGGCTCTG
GACTACTTGGAAGCTAGTAAGGTCATCTACACCAATGGCTGTATTGACAAGTTGGTCAACTGGATACACA
GCAACCTGTTCCTGCTTGGTGGTGTGGCACTAGGCCTGGCCATCCCCCAGCTGGTGGGAATCCTGCTATC
CCAGGTCCTCGTGAATCAAATAAAAGATCAGATCAAGCTACAGCTCTACAACCAACAGCACCGAGCTGAC
CCGTGGTACTGA

Translation (283 aa):
MARRPGVPAAYGDEFSFVSPLVKYLLFFFNMLFWVISMVMVAVGVYARLMKHAEAALACLAVDPAILLIV
VGVLMFLLTFCGCIGSLRENICLLQTFSLCLTIVFLLQLAAGILGFVFSDKARGKVSEIINNAIVHYRDD
LDLQNLIDFGQKKFSCCGGISYRDWSQNMYFNCSEDNPSRERCSVPYSCCLPTPNQAVINTMCGQGMQAL
DYLEASKVIYTNGCIDKLVNWIHSNLFLLGGVALGLAIPQLVGILLSQVLVNQIKDQIKLQLYNQQHRAD
PWY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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