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Report for CCDS19646.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19646.1 Public Mus musculus 5 Rad9b 23 108 98 CCDS HistoryNCBI Gene:231724Re-query CCDS DB by CCDS ID:19646.1Re-query CCDS DB by GeneID:231724See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 19646.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049009.6 ENSMUSP00000036177.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049009.6Link to Ensembl Protein Viewer:ENSMUSP00000036177.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000049009Re-query CCDS DB by Protein ID:ENSMUSP00000036177
Original member NCBI NM_144912.3 NP_659161.2 Updated not alive Link to Nucleotide Sequence:NM_144912.3Link to Protein Sequence:NP_659161.2Re-query CCDS DB by Nucleotide ID:NM_144912Re-query CCDS DB by Protein ID:NP_659161
Current member NCBI NM_144912.4 NP_659161.2 Accepted alive Link to Nucleotide Sequence:NM_144912.4Link to Protein Sequence:NP_659161.2Re-query CCDS DB by Nucleotide ID:NM_144912Re-query CCDS DB by Protein ID:NP_659161Link to BLAST:NP_659161.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659161.2 403 Q6WBX7 403 100% 0 0

Chromosomal Locations for CCDS 19646.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 122325869 122325979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122331469 122331697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122333296 122333415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122334262 122334326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122334410 122334516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122339732 122339838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122344198 122344297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122351259 122351373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122351561 122351710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122352544 122352614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 122354139 122354175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGCTGAAGTGCGGGATGACGGGCGGCCAGGTGAAAGTATTTGGGAAAGCAGTACAAACGCTATCACGAG
TGAGCGATGAGCTGTGGCTAGACCCATCCGAGAAAGGTCTTGCTCTGAGATCTGTGAATTCTTGTCATTC
CACGTATGGCTACGTCCTGTTTTCATCTATGTTTTTTCAACATTATCAGTGGTCACCCTTTGCCACGATG
AGTGATACTGACTTACCACTGAATTTAAATTGCAAATTGGCAATAAAGTCAGTTCTGCCAATCTTTAGAT
GTCTGAATTACCTTGAAAGAAGTGTGGAGAAGTGCACAGTAGTCGCCAGAGCGGATAAATGCAGAGTCGT
CATTCAGTTCTTCGGCAAGCATGGTATTAAAAGAACTCACAATGTGTATTTCCAAGACAGCCAGCCCTTG
AAAATTATCTTCGAAAAGAGTCTGTGTGCGAATATCCTGATGATTAAACCAAGACTGCTGACTGAGGCCA
TTGCTCTTCTGACATCAAATCAAGAGGAAGTCACCTTCTCTGTTACTCCAGGGAACTTTTGCCTCAAGAG
TTTGAGTGGGGAATTGCTGGATTTGACCAGCTCTGTGTACAGTGAGATGTCTTTTGGCCCGGAAGAGTTT
GACTTCTTTCAGGTTGGACTTGATACCGAGATAACATTTTGCTTTAAAGAACTGAAGGGGATCCTCACCT
TCTCAGAAGTGATGCACGCACCTCTAGCCATCTACTTTGACTTTCCTGGAAAACCGGTTGTTTTGAGTGT
TGAAGACATGCTCTTGGAAGCAAACTTTATCTTGGCCACGTTAGTGGATTATCCGAGTAGAACATCTTCA
CCACAGTTACTGCCCCTTTCCCAGGCACGAAGGTCACACCCCATACAGTCCAGTGCCCCGGAGGATAAAA
GCAGAGTCAGTCAGACCCCAGAGAGCATCTCTCGAGCAGCGCCCAAAAGACTATTTCCCAAGGATTCTCC
TGACAGCAGCTCTGCAGCTGAAACCAAGAGAGCCAGCGCCGGCCAGGATGACATCTTCGAAGTGCCTGAA
AGTGTTGTTAGTGACATGGAGGAAGAGCGGAGCCCTTCACACCTCAGGAAGTTTTCCTGCATGTTCTTTG
GAGCTGTATCTTGTGAACAGCAAGAGTATGCCGGCCACCCCTTGGACAGCCTGGCAGTAGCAAGCGACAG
TGAGGAGGACGTGAGTGGCTGA

Translation (403 aa):
MLKCGMTGGQVKVFGKAVQTLSRVSDELWLDPSEKGLALRSVNSCHSTYGYVLFSSMFFQHYQWSPFATM
SDTDLPLNLNCKLAIKSVLPIFRCLNYLERSVEKCTVVARADKCRVVIQFFGKHGIKRTHNVYFQDSQPL
KIIFEKSLCANILMIKPRLLTEAIALLTSNQEEVTFSVTPGNFCLKSLSGELLDLTSSVYSEMSFGPEEF
DFFQVGLDTEITFCFKELKGILTFSEVMHAPLAIYFDFPGKPVVLSVEDMLLEANFILATLVDYPSRTSS
PQLLPLSQARRSHPIQSSAPEDKSRVSQTPESISRAAPKRLFPKDSPDSSSAAETKRASAGQDDIFEVPE
SVVSDMEEERSPSHLRKFSCMFFGAVSCEQQEYAGHPLDSLAVASDSEEDVSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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