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Report for CCDS19609.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19609.1 Public Mus musculus 5 Fbxw8 23 108 98 CCDS HistoryNCBI Gene:231672Re-query CCDS DB by CCDS ID:19609.1Re-query CCDS DB by GeneID:231672See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19609.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049474.8 ENSMUSP00000047012.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049474.8Link to Ensembl Protein Viewer:ENSMUSP00000047012.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049474Re-query CCDS DB by Protein ID:ENSMUSP00000047012
Original member Current member NCBI NM_172721.2 NP_766309.2 Accepted alive Link to Nucleotide Sequence:NM_172721.2Link to Protein Sequence:NP_766309.2Re-query CCDS DB by Nucleotide ID:NM_172721Re-query CCDS DB by Protein ID:NP_766309Link to BLAST:NP_766309.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766309.2 598 Q8BIA4-1 598 100% 0 0

Chromosomal Locations for CCDS 19609.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 118068085 118068229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118068605 118068715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118070346 118070519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118077577 118077704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118092496 118092702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118095533 118095729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118113612 118113769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118124936 118125024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118128809 118128973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118142668 118142772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 118155064 118155381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1797 nt):
ATGGACGACCACAACCTGGAGGAGTTCCGCCGGCACTGGCAGGAGGAGTTGGCGCAGTCACAGGCGCTGA
GGCGACGGCGGCGGCTCGAGGCTGGGGAGCGGCGGTCGCCGCGAAGGCCCGAGGCGGGAGCGCGAGGCGA
GCCGGCCTCGGGCTACCTGGGGCTGGCGCAGGGGCTGCTGGAGGGCGCGGGCCGACCCCCGGCGCCCAGG
CCTGGCCGGGGAGGCGACAGGAAGGATACGTCCAGCCGATCGCGCTCACCCCCAGACCGCGACGCCACGG
AGCCCGAGCCGCTGGTGGATCAGCTCATCCGCGACTTGAATGAGCTGGATGACGTGCCCTTCTTTGATGT
CCGTCTGCCTTACGAACTGGCCATCAATATATTCCAGTATCTGAACAGAAGAGAGCTGGGACTGTGTGCT
CAGGTGAGCAAGACATGGAAGGTGATTGCTGAAGACGAGGTGCTGTGGTACCGGCTGTGCCGACAGGAGG
GGCACCTTCCCCACAGCAGATTCTCCGATTACACCTGCTGGAAGCTCATCTTGCAAGAGTGCCTCGCCAA
GGAGCACACATTAAGAGCCAACTGGAAGAATCGCAAAGGTGCCGTGAGCGAGCTGGAGCATGTTCCCGAC
GCTGTTTTGTGTGACGTGCGTTCTCACGATGGTGTGGTCATTGCTGGATACACGTCAGGGGATGTGCGGG
TGTGGGACACCCGCACCTGGGACTACGTGGCCCCCTTCCTGGAGTCTGAGTCTGAGGAGGAGGATCCTGG
AATGCAGCCATATGTCTCCTTTGTGAGGATCAACAGCTCGCTGGCAGTGGCGGCTTACGAGGATGGGATC
CTTAACATTTGGGACCTGAGAACCGGAAGGTTCCCTATCTTTCGTTTTGAGCATGACGCAAGAATACAAG
CCCTTGCGCTGAGCCAAGAAAAGCCCATTGTTGCCACGGCTTCTGCTTTTGACGTTGTGATGTTGTACCC
CAACGAGGAGGGGCATTGGCATGTGGCCTCGGAGTTTGAAGTTCAGAAGCTGGTTGACTACCTTGAAATA
GTTCCGAATACTGGGAGGTACCCTGTGGCAATAGCCACAGCCGGGGATCTGGTGTACCTGCTGAAGGCCG
ACGACTCAGCCAGAACCCTTCATTATGTCTATGGCCAGCCTGCCACATGTCTGGATGTCTCAGCCAGCCA
GGTTGCCTTTGGAGTGAAGAGTCTAGGATGGGTGTATGAAGGAAACAAGATCCTGGTGTACAGCCTGGAA
GCAGAGCGCTGCCTCTCGAAGCTGGGCAATGCACTTGGAGACTTTACCTGTGTCAACATCCGGGATAGCC
CTCCCAACCTCATGGTCAGCGGCAACATGGACAGGAGAGTGAGGATCCATGACCTCCGCAGCGATAAGAT
CGCCCTGTCGCTGTCTGCCCATCAGCTGGGGGTGTCCGCAGTCCAGATGGATGACTGGAAGGTTGTCAGT
GGAGGCGAGGAGGGGCTGGTGTCTGTGTGGGATTACCGCATGAACCAGAAGCTGTGGGAAGTGCACTCCA
GGCACCCTGTGCGCTATCTCTCCTTCAATAGCCACAGCCTCATCACTGCCAACGTGCCCTACGAGAAGGT
GCTGCGAAACTCCGACCTCGACAACTTTGCCTGTCACAGGAGACATCGTGGCCTGATCCATGCCTATGAA
TTTGCTGTGGACCAGCTGGCCTTTCAGAGCCCCCTTCCTGTCTGCCGCTTACCCCGTGACATCATGGCTG
GATACAGCTATGACCTCGCACTGTCTTTCCCCCATGACAGTATTTAG

Translation (598 aa):
MDDHNLEEFRRHWQEELAQSQALRRRRRLEAGERRSPRRPEAGARGEPASGYLGLAQGLLEGAGRPPAPR
PGRGGDRKDTSSRSRSPPDRDATEPEPLVDQLIRDLNELDDVPFFDVRLPYELAINIFQYLNRRELGLCA
QVSKTWKVIAEDEVLWYRLCRQEGHLPHSRFSDYTCWKLILQECLAKEHTLRANWKNRKGAVSELEHVPD
AVLCDVRSHDGVVIAGYTSGDVRVWDTRTWDYVAPFLESESEEEDPGMQPYVSFVRINSSLAVAAYEDGI
LNIWDLRTGRFPIFRFEHDARIQALALSQEKPIVATASAFDVVMLYPNEEGHWHVASEFEVQKLVDYLEI
VPNTGRYPVAIATAGDLVYLLKADDSARTLHYVYGQPATCLDVSASQVAFGVKSLGWVYEGNKILVYSLE
AERCLSKLGNALGDFTCVNIRDSPPNLMVSGNMDRRVRIHDLRSDKIALSLSAHQLGVSAVQMDDWKVVS
GGEEGLVSVWDYRMNQKLWEVHSRHPVRYLSFNSHSLITANVPYEKVLRNSDLDNFACHRRHRGLIHAYE
FAVDQLAFQSPLPVCRLPRDIMAGYSYDLALSFPHDSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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