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Report for CCDS19377.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19377.1 Public Mus musculus 5 Stap1 23 108 98 CCDS HistoryNCBI Gene:56792Re-query CCDS DB by CCDS ID:19377.1Re-query CCDS DB by GeneID:56792See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19377.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000198435.4 ENSMUSP00000143251.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000198435.4Link to Ensembl Protein Viewer:ENSMUSP00000143251.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000198435Re-query CCDS DB by Protein ID:ENSMUSP00000143251
Original member Current member NCBI NM_019992.4 NP_064376.1 Accepted alive Link to Nucleotide Sequence:NM_019992.4Link to Protein Sequence:NP_064376.1Re-query CCDS DB by Nucleotide ID:NM_019992Re-query CCDS DB by Protein ID:NP_064376Link to BLAST:NP_064376.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064376.1 297 Q9JM90-1 297 100% 0 0

Chromosomal Locations for CCDS 19377.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 86071838 86071957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86077989 86078060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86081167 86081280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86084389 86084445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86086650 86086822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86090897 86091025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86094733 86094802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86096497 86096593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86103700 86103761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGATGGCGAAAAAGCCCCCGAAACCTGCCCCTCGCAGGATCTTCCAGGAAAGACTGAAGATCACTGCTC
TGCCCCTGTACTTTGAAGGATTTTTACTGGTCAAACGGTCTGATCACCAGGAGTACAAACACTATTGGAC
GGAGCTGAGAGGGACCACGCTGTTCTTTTACACTGACAAAAAAAGCACAATCTATGTTGGCAAGTTAGAT
ATAATAGACCTCGTGTGCCTTACTGGCCAACATTCAACTGAAAAGAATTGTGCAAAATTCACTCTTGTTT
TGCCCAAAGAAGAAGTGCATGTGAAGACAGAAAACACAGAAAGTGGAGAAGAATGGAGGGGCTTCATTCT
TACAGTAACAGAGTTGACAGTTCCTCAGCATGTGTCACTTCTACCTGGGCAAGTGATTAGACTGCACGAA
GTCTTAGAGAGAGAAAAGAAAAGAAGGATTGAGACAGATCAGCTGCCTCTTATGCCTCCGGAGAAAGAGA
AGGAGCCAGTACAAGACTATGCGGATGTACTGAACCCACTGCCTGAATGTTTTTATGCAGTTTCCCGGAA
AGAAGCAACTGCAATGCTGGAAAAGAACCCTTCTTGGGGAAATATGATCCTGAGGCCTGGTAGTGACAGC
AAAAACTACTCCATCACTATCCGGCAGGAGATAGAAATGCCAAGAATCAAGCACTTCAAAGTGACGCGCA
CTGGAAACAACTACACCATCGAGCTGGAAAAACCTGTAACACTCCCAAACCTTTTCAGTGTCATTGATTA
TTTTGTGAAGGAGACTCGAGGGAATTTGAGACCATTTATACATTCAGCTGATGACAACTTTGGTCAAGAT
CCCAACATAGAAGACAGGAGTGAGAAGTTTAAGAAAAATCCACACAATGCATGA

Translation (297 aa):
MMAKKPPKPAPRRIFQERLKITALPLYFEGFLLVKRSDHQEYKHYWTELRGTTLFFYTDKKSTIYVGKLD
IIDLVCLTGQHSTEKNCAKFTLVLPKEEVHVKTENTESGEEWRGFILTVTELTVPQHVSLLPGQVIRLHE
VLEREKKRRIETDQLPLMPPEKEKEPVQDYADVLNPLPECFYAVSRKEATAMLEKNPSWGNMILRPGSDS
KNYSITIRQEIEMPRIKHFKVTRTGNNYTIELEKPVTLPNLFSVIDYFVKETRGNLRPFIHSADDNFGQD
PNIEDRSEKFKKNPHNA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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