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Report for CCDS19249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19249.1 Public Mus musculus 5 Msx1 23 108 98 CCDS HistoryNCBI Gene:17701Re-query CCDS DB by CCDS ID:19249.1Re-query CCDS DB by GeneID:17701See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19249.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063116.9 ENSMUSP00000058354.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063116.9Link to Ensembl Protein Viewer:ENSMUSP00000058354.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000063116Re-query CCDS DB by Protein ID:ENSMUSP00000058354
Original member Current member NCBI NM_010835.2 NP_034965.2 Accepted alive Link to Nucleotide Sequence:NM_010835.2Link to Protein Sequence:NP_034965.2Re-query CCDS DB by Nucleotide ID:NM_010835Re-query CCDS DB by Protein ID:NP_034965Link to BLAST:NP_034965.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034965.2 303 P13297 303 100% 0 0

Chromosomal Locations for CCDS 19249.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 37821258 37821700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 37823865 37824333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGGCCCCGGCTGCTGCTATGACTTCTTTGCCACTCGGTGTCAAAGTGGAGGACTCCGCCTTCGCCAAGC
CTGCTGGGGGAGGCGTTGGCCAAGCCCCCGGGGCTGCTGCGGCCACCGCAACCGCCATGGGCACAGATGA
GGAGGGGGCCAAGCCCAAAGTGCCCGCTTCACTCCTGCCCTTCAGCGTGGAGGCCCTCATGGCCGATCAC
AGGAAGCCCGGGGCCAAGGAGAGCGTCCTGGTGGCCTCCGAAGGGGCTCAGGCAGCGGGTGGCTCGGTGC
AGCACTTGGGCACCCGGCCCGGGTCTCTGGGCGCCCCGGATGCGCCCTCCTCGCCGCGGCCTCTCGGCCA
TTTCTCAGTCGGAGGACTCCTCAAGCTGCCAGAAGATGCTCTGGTGAAGGCCGAAAGCCCCGAGAAACTA
GATCGGACCCCGTGGATGCAGAGTCCCCGCTTCTCCCCGCCCCCAGCCAGACGGCTGAGTCCCCCAGCAT
GCACCCTACGCAAGCACAAGACCAACCGCAAGCCCAGGACGCCTTTCACCACAGCTCAGCTGCTGGCTCT
GGAGCGCAAGTTCCGCCAGAAGCAGTACCTGTCTATTGCCGAGCGCGCGGAATTCTCCAGCTCGCTCAGC
CTCACCGAGACCCAGGTGAAGATCTGGTTCCAGAACCGTCGCGCTAAGGCCAAGAGACTGCAGGAGGCGG
AGCTGGAGAAGCTGAAGATGGCCGCGAAACCCATGTTGCCGCCTGCTGCCTTCGGCCTCTCTTTTCCTCT
TGGCGGTCCTGCAGCGGTGGCTGCAGCTGCGGGCGCCTCACTCTACAGTGCCTCTGGCCCTTTCCAGCGC
GCCGCGCTGCCTGTAGCGCCCGTGGGACTCTACACCGCCCATGTAGGCTACAGCATGTACCACCTGACTT
AG

Translation (303 aa):
MAPAAAMTSLPLGVKVEDSAFAKPAGGGVGQAPGAAAATATAMGTDEEGAKPKVPASLLPFSVEALMADH
RKPGAKESVLVASEGAQAAGGSVQHLGTRPGSLGAPDAPSSPRPLGHFSVGGLLKLPEDALVKAESPEKL
DRTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLS
LTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYSASGPFQR
AALPVAPVGLYTAHVGYSMYHLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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