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Report for CCDS19212.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19212.1 Public Mus musculus 5 Mxd4 23 108 98 CCDS HistoryNCBI Gene:17122Re-query CCDS DB by CCDS ID:19212.1Re-query CCDS DB by GeneID:17122See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 19212.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042701.12 ENSMUSP00000039071.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042701.12Link to Ensembl Protein Viewer:ENSMUSP00000039071.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000042701Re-query CCDS DB by Protein ID:ENSMUSP00000039071
Original member NCBI NM_010753.2 NP_034883.2 Updated not alive Link to Nucleotide Sequence:NM_010753.2Link to Protein Sequence:NP_034883.2Re-query CCDS DB by Nucleotide ID:NM_010753Re-query CCDS DB by Protein ID:NP_034883
Current member NCBI NM_010753.3 NP_034883.2 Accepted alive Link to Nucleotide Sequence:NM_010753.3Link to Protein Sequence:NP_034883.2Re-query CCDS DB by Nucleotide ID:NM_010753Re-query CCDS DB by Protein ID:NP_034883Link to BLAST:NP_034883.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034883.2 209 Q60948 209 98.5646% 0 3

Chromosomal Locations for CCDS 19212.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 34176992 34177149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34177598 34177760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34178810 34178924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34184314 34184343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34187329 34187428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34187510 34187573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (630 nt):
ATGGAGCTGAACTCTCTGCTGCTGCTGTTGGAGGCGGCCGAGTACCTGGAGCGTAGGGACCGAGAGGCCG
AGCACGGCTACGCCTCCGTGCTGCCCTTCGACGGCGACTTCGCAAGGAAGAAAACAAAGACGGCCGGCCT
GGTGCGCAAGGCCCCGAACAACAGGTCTTCACACAACGAACTAGAAAAGCACAGACGAGCTAAACTCAGG
CTCTACTTGGAGCAGCTCAAGCAGCTGGTACCCCTGGGCCCTGACAGCACACGTCACACTACTCTGAGCC
TTCTGAAGCGTGCTAAGATGCACATCAAGAAACTGGAGGAGCAGGACCGCAGGGCACTGAGCATCAAGGA
ACAGCTTCAGCGGGAACATCGCTTCCTAAAGAGACGTTTGGAGCAGCTATCAGTGCAGAGTGTAGAGCGT
GTGCGCACAGACAGCACTGGCTCTGCTGTGTCCACAGATGACTCAGAGCAAGAGGTGGATATAGAGGGCA
TGGAGTTTGGCCCTGGGGAGCTGGACAGTGCTGGCAGCAGCAGTGATGCCGATGACCACTACAGCCTACA
GAGCAGTGGCTGCAGCGACAGCAGCTATGGGCACCCTTGCAGGCGGCCTGGCTGCCCTGGCCTTTCGTAG

Translation (209 aa):
MELNSLLLLLEAAEYLERRDREAEHGYASVLPFDGDFARKKTKTAGLVRKAPNNRSSHNELEKHRRAKLR
LYLEQLKQLVPLGPDSTRHTTLSLLKRAKMHIKKLEEQDRRALSIKEQLQREHRFLKRRLEQLSVQSVER
VRTDSTGSAVSTDDSEQEVDIEGMEFGPGELDSAGSSSDADDHYSLQSSGCSDSSYGHPCRRPGCPGLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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