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Report for CCDS19194.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19194.1 Public Mus musculus 5 Pisd 23 108 98 CCDS HistoryNCBI Gene:320951Re-query CCDS DB by CCDS ID:19194.1Re-query CCDS DB by GeneID:320951See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19194.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061895.15 ENSMUSP00000051438.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061895.15Link to Ensembl Protein Viewer:ENSMUSP00000051438.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000061895Re-query CCDS DB by Protein ID:ENSMUSP00000051438
Original member Current member NCBI NM_177298.3 NP_796272.2 Accepted alive Link to Nucleotide Sequence:NM_177298.3Link to Protein Sequence:NP_796272.2Re-query CCDS DB by Nucleotide ID:NM_177298Re-query CCDS DB by Protein ID:NP_796272Link to BLAST:NP_796272.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796272.2 406 Q8BSF4 406 100% 0 0

Chromosomal Locations for CCDS 19194.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 32737230 32737454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32737986 32738146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32738388 32738534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32738782 32738920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32739137 32739373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32764773 32764948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32774396 32774466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 32785549 32785613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGGCGGCGTCTGGGGGCCGCGCGTGTGTGCGCTCGCTTCGTGGAGGTGTGCTGTGGCGGAGCAGCCCCT
GTCACTATGAATCTACTGCCACACGCCATTTTCTGGGGACCTTACAGAAATTGCCTCTTCAGGCAGGTGT
CAGAAATTTCCATACTGCTCCTGTCCGATCCTTGTTCCTGCTGCGCCCTGTGCCCATCCTGTTGGCAACA
GGTGGAGGGTATGCCGGGTACCGGCAGTATGAGAAGTACAGGGAACGGAAGCTTGAGAAGCTGGGCTTGG
AGATCCCGCCCAAACTTGCTAGTCACTGGGAGGTGTCCCTGTATAAATCTGTGCCAACGCGTTTGCTGTC
ACGTGCCTGTGGTCGCCTCAACCAAGTAGAACTTCCTTACTGGCTCCGGAGGCCAGTCTACAGCCTGTAT
ATCTGGACCTTTGGGGTGAACATGACTGAGGCTGCAGTGGAGGACCTGCACCACTACCGCAACCTCAGCG
AGTTCTTCCGGCGTAAGCTGAAGCCTCAGGCACGGCCCGTATGTGGCTTGCACTGTGTGACCAGCCCATC
AGATGGCAAGATCCTCACCTTTGGGCAGGTGAAGAACTCTGAGGTGGAGCAGGTAAAGGGCGTAACCTAC
TCCTTGGAGTCCTTCCTGGGCCCTCGAGCCAATACAGAGGACCTGCCCTTCCCTCCAGCTTCCTCCAGTG
ACTCCTTCAGAAACCAGCTGGTCACCCGGGAAGGGAATGAGCTGTACCACTGTGTCATCTACCTGGCCCC
AGGAGACTACCACTGCTTCCACTCCCCCACTGACTGGACCATCTCACATCGGCGCCACTTCCCAGGTTCC
CTGATGTCAGTGAACCCTGGCATGGCCCGATGGATCAAAGAGCTCTTTTGTCACAATGAGCGTGTAGTCC
TAACTGGAGACTGGAAACATGGGTTCTTCTCGTTGACAGCAGTGGGAGCCACCAATGTGGGCTCTATCCG
TATCCACTTTGACCGAGACCTGCACACAAACAGCCCCAGGTACAGCAAGGGCTCCTACAATGACCTGAGC
TTTGTAACACATGCCAACAAGGAGGGCATTCCCATGCGCAAGGGTGAGCCCCTGGGGGAGTTCAACCTGG
GCTCCACCATCGTGCTCATCTTCGAGGCACCCAAGGACTTCAACTTCAGGCTGAAGGCAGGGCAGAAGAT
CCGCTTTGGGGAAGCACTGGGCTCCCTCTAG

Translation (406 aa):
MAASGGRACVRSLRGGVLWRSSPCHYESTATRHFLGTLQKLPLQAGVRNFHTAPVRSLFLLRPVPILLAT
GGGYAGYRQYEKYRERKLEKLGLEIPPKLASHWEVSLYKSVPTRLLSRACGRLNQVELPYWLRRPVYSLY
IWTFGVNMTEAAVEDLHHYRNLSEFFRRKLKPQARPVCGLHCVTSPSDGKILTFGQVKNSEVEQVKGVTY
SLESFLGPRANTEDLPFPPASSSDSFRNQLVTREGNELYHCVIYLAPGDYHCFHSPTDWTISHRRHFPGS
LMSVNPGMARWIKELFCHNERVVLTGDWKHGFFSLTAVGATNVGSIRIHFDRDLHTNSPRYSKGSYNDLS
FVTHANKEGIPMRKGEPLGEFNLGSTIVLIFEAPKDFNFRLKAGQKIRFGEALGSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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