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Report for CCDS18830.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
18830.1 |
Public |
Mus musculus |
4 |
Ubxn10 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:212190](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:18830.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:212190](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 4 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 18830.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000105809.1 |
ENSMUSP00000101435.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000105809.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000101435.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000105809](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000101435](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000105810.7 |
ENSMUSP00000101436.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000105810.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000101436.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000105810](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000101436](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000105811.8 |
ENSMUSP00000101437.2 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000105811.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000101437.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000105811](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000101437](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000146415.1 |
ENSMUSP00000117219.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000146415.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000117219.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000146415](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000117219](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001285928.1 |
NP_001272857.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001285928.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001272857.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001285928](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001272857](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001272857.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001285929.1 |
NP_001272858.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001285929.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001272858.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001285929](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001272858](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001272858.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001285930.1 |
NP_001272859.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001285930.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001272859.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001285930](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001272859](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001272859.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_178671.5 |
NP_848786.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_178671.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_848786.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_178671](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_848786](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_848786.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 18830.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (834 nt): ATGGCCATAGAAGCCCCTGTGAACTTTGCACCACCTGAACGCAGCACTGTGGTCAGCACCGCAGGCGACA GCTCCACCTGGCAGCCCAGCTCACTCAGGATGCACGTTATCAGGCCCAAGTCTGCCAAGGGCCGGAAGCG GCCGAATTTGCACAGACCACAAGGCATGGGGGACGGCTCCCCCAGTGCACTATCCTCTTCACCTCCACCA CGGTCCTCCGGGTCTCCCAGCAACCAGAAACCAGGAGTCTGTGCAACGGTCTCAACATCTCAGGGAGCTC CTGACGAGATGCCGGAGTTGCTGCTGCAGCAGGCACCGACACGGACCGCCTCATCTCTCAACAGGTACCC GGTCCTCCCATCCATCAACAGGAGGAGCTTAGAGGTGGGAGCCGTGGACACTGTGGCCAGCAAGACCAGT TCCCTGCAGCTGAGCAGCGTCCAGGCCCTTTACCAAGAGGATTCAAGCCAGGAAGACTCCAGAACGCAGG TCTGTGCCTTAGAGAAGAAGTTCATCATCCGAACCAAAAGACAGAGCTCCTCCAGGGCCTCCAACATCGA GGAGCCGTCGGACGAAGAGCCAAGGCTGCTGCTGGCTGTCCGGTCACCCTCAGGCCAAAGGTTCGTGCGC TATTTCAGGCCCAGTGACGACCTCCAGACCGTCCTCGAGGTGGCCGAGCAGAAAAACAAAGCCACCTACC AACACTGCAGCATTGAGACGATGGAAGTGCCCAGGAGACGGTTCTCCGACCTCACCAAGTCCCTCCAGGA ATGCGGCATCCTTCATAAATCCGTGTTGGGCATCTCGCAGGAGGAGGGGGAGGCGTGGCCCTGA
Translation (277 aa): MAIEAPVNFAPPERSTVVSTAGDSSTWQPSSLRMHVIRPKSAKGRKRPNLHRPQGMGDGSPSALSSSPPP RSSGSPSNQKPGVCATVSTSQGAPDEMPELLLQQAPTRTASSLNRYPVLPSINRRSLEVGAVDTVASKTS SLQLSSVQALYQEDSSQEDSRTQVCALEKKFIIRTKRQSSSRASNIEEPSDEEPRLLLAVRSPSGQRFVR YFRPSDDLQTVLEVAEQKNKATYQHCSIETMEVPRRRFSDLTKSLQECGILHKSVLGISQEEGEAWP
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