NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18735.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18735.1 Public Mus musculus 4 Themis2 23 108 98 CCDS HistoryNCBI Gene:230787Re-query CCDS DB by CCDS ID:18735.1Re-query CCDS DB by GeneID:230787See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18735.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045154.5 ENSMUSP00000036945.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045154.5Link to Ensembl Protein Viewer:ENSMUSP00000036945.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000045154Re-query CCDS DB by Protein ID:ENSMUSP00000036945
Original member Current member NCBI NM_001033308.2 NP_001028480.1 Accepted alive Link to Nucleotide Sequence:NM_001033308.2Link to Protein Sequence:NP_001028480.1Re-query CCDS DB by Nucleotide ID:NM_001033308Re-query CCDS DB by Protein ID:NP_001028480Link to BLAST:NP_001028480.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028480.1 663 Q91YX0 663 100% 0 0

Chromosomal Locations for CCDS 18735.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 132782896 132783005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132783348 132783498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132785183 132786270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132789545 132789952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132792478 132792618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132796260 132796353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1992 nt):
ATGGAGCCGGTGCCGCTGCAGGACTTTGTGAGCGGCCTGGACCCCACCTCCCTTCCGCGCGTGCTGCGGG
TCTGCTCCGGAGTCTACTTTGAGGGTTCCGTCTACGAGCTCTTTGGGAATGAGTGCTGCCTCTCCACCGG
GGACCTAATCAAGGTCACTCATGTCCAGCTCCAAAAGGTTGTGTGCGAGTATCCAGAGACGGGTCAGACG
TTGGAGCTCAACCCCAATTTCACAGGCCTCTTCAGCCCACTCACCAGCCTGCGAAGCTACAGAACCCTGG
AGGACCTTGTCTCTGCCATGCCCCAGAACTCCACCCGGTGGCCCATTTACTTCAAGTCAACTCAGAGAAT
TGTCACCAAGGCCAGTGTGGTGCCTGAGGATCAGCCCCTCAGACTTGAGGCTGTGGAAATACACCATGGG
ATCCGCTATGCGCGCTGCGTCCAGGTCTCAAAGACCAAGGAGCTCCTTCATCTGCCCCTTTCCCAGAAGG
GACCCTTCTGGAGATGCAAGCCCAGTGCTCCACAAACTCTGCACCAAATCCTGCAGGACCCAGCTCTGAA
GGACCTCACGCTCAGCTGCCCCAGCCTACCCTGGAACTCCGTGATCCTAAAACCCCAGTATATGCTCCAA
GCCATCATGCACATGCGCAGCAGCATCGTCAAGATCCCGTCTACGCTGGAGGTGGAGGTAGAAGACGTCA
CTGCTTCCTCCCAACACATCCACTTCTTCAAACCCTTGCGGCTGAGCGAGGTGTTGGCTGGGGGAGGCCC
CTTCCCTCTGACCACGGAGATCCTGGAGGTTCCTGAGGGTCCGCCCGTCTTCCTCAGCCCGTGGGTGAGC
TTCCTACGCAAAGGCCAGAGGCTCTGCATCTATGGTCCAGCTTCACCATCCTGGCGGGTTGTGGCCTCCA
GCAAGAGCCGAAAAGTGCCCAGATACTTCATGCTCTCTGGGGCCTACCAGGGCAAGCTCAAGCGGAGGCC
CAGGGAGTTCTCCACCGCCTATGACCTTTTGGGGGCTCTCCAGCCAGGCCGGCCCCTCCGGGTGGTAGCC
ACAAAAGACTGTGATGGGAATGAGGAAGAGAATCCTGACTTTTCTTTCTTGGCTGTGGGTGATCGGCTGG
AAGTGCTGAGGTCAGGCCAGGTCTGTGGGACCAAAGGCCAGGACATAGATGTCCTGGTATGTCAGCGGCT
GAGTGAGCAGTCTGGGGAGGAAGAGGAGGACTTGGAGGAGATCGAGGACGAGGCAGAGGACAAAGAGCAA
ATTCTGCTACCCCTCTACCTCTCTGGGAGCTTTGTGGAGGAGGTGAACGACAGCCGACGCTATAACCTAG
TGGATCTCACGGCCCAGTACTCCCTGCCCTGTGAGGTCAAGGTGGTGACCAAGGATACCCGTCACCCCAC
TGACCCCCTGGCTTCCTTCCCTGGCCTGCGGCTGGAGGAGAAGCTCACAGAACCCTTTTTGGTGGTAAGC
CTGGACTCCCAGCCAGAAATGTGCTTTGAGATCCCTCCCCGGTGGCTGGACCTGACTGTGGTGGAGGCTG
AGGGACAGCCAGCCCAGGTGGCTCGGCCGCTGTCCATCGCTCCGGTGGAGGAACTGTCAGAAGCTTTCTA
CTACAGCCTCCGGAAGCTGCCAGCCTCTGAGAGCCAAGCCCCCCCGCCCAGGCCCCCAAAGAGCCAGGGT
ATCAATAAGAAACAGCAGAACATACAGAGCTGTAAAGAGAGCAGTGTAAAGCCTCAAGTTGTAGAACCGC
AGAAATCCTGCCCGCAGCCTCAACTCAAGGCGAAGACCTTGGAAGCCCTTCCCAAGAACAAATCAAATGT
GTACAGCAAGATTTCTGTCCACAAGAAAGACCGCAAACCCAACCCCCAAACACAGAATTCAGTGCTGAGT
ATGAAGCCCAAAACCTCGAGCTCCCTCGGCAAGCACTCTACCATGGAGTCACATCTCCTGCCTGACCCGG
ATATGGATGACCATGACTATGAAGAAATTTGA

Translation (663 aa):
MEPVPLQDFVSGLDPTSLPRVLRVCSGVYFEGSVYELFGNECCLSTGDLIKVTHVQLQKVVCEYPETGQT
LELNPNFTGLFSPLTSLRSYRTLEDLVSAMPQNSTRWPIYFKSTQRIVTKASVVPEDQPLRLEAVEIHHG
IRYARCVQVSKTKELLHLPLSQKGPFWRCKPSAPQTLHQILQDPALKDLTLSCPSLPWNSVILKPQYMLQ
AIMHMRSSIVKIPSTLEVEVEDVTASSQHIHFFKPLRLSEVLAGGGPFPLTTEILEVPEGPPVFLSPWVS
FLRKGQRLCIYGPASPSWRVVASSKSRKVPRYFMLSGAYQGKLKRRPREFSTAYDLLGALQPGRPLRVVA
TKDCDGNEEENPDFSFLAVGDRLEVLRSGQVCGTKGQDIDVLVCQRLSEQSGEEEEDLEEIEDEAEDKEQ
ILLPLYLSGSFVEEVNDSRRYNLVDLTAQYSLPCEVKVVTKDTRHPTDPLASFPGLRLEEKLTEPFLVVS
LDSQPEMCFEIPPRWLDLTVVEAEGQPAQVARPLSIAPVEELSEAFYYSLRKLPASESQAPPPRPPKSQG
INKKQQNIQSCKESSVKPQVVEPQKSCPQPQLKAKTLEALPKNKSNVYSKISVHKKDRKPNPQTQNSVLS
MKPKTSSSLGKHSTMESHLLPDPDMDDHDYEEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH