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Report for CCDS18655.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18655.1 Public Mus musculus 4 Clspn 23 108 98 CCDS HistoryNCBI Gene:269582Re-query CCDS DB by CCDS ID:18655.1Re-query CCDS DB by GeneID:269582See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18655.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048391.14 ENSMUSP00000045344.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048391.14Link to Ensembl Protein Viewer:ENSMUSP00000045344.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000048391Re-query CCDS DB by Protein ID:ENSMUSP00000045344
Original member NCBI NM_175554.4 NP_780763.3 Updated not alive Link to Nucleotide Sequence:NM_175554.4Link to Protein Sequence:NP_780763.3Re-query CCDS DB by Nucleotide ID:NM_175554Re-query CCDS DB by Protein ID:NP_780763
Current member NCBI NM_175554.5 NP_780763.3 Accepted alive Link to Nucleotide Sequence:NM_175554.5Link to Protein Sequence:NP_780763.3Re-query CCDS DB by Nucleotide ID:NM_175554Re-query CCDS DB by Protein ID:NP_780763Link to BLAST:NP_780763.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780763.3 1315 Q80YR7 1315 100% 0 0

Chromosomal Locations for CCDS 18655.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 126557114 126557137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126559208 126559316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126559919 126560352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126561758 126561919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126563907 126563984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126564933 126565005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126565690 126565798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126565971 126566581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126572279 126572470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126573136 126573308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126574641 126574816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126575095 126575159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126575846 126576042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126576342 126576496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126577613 126577842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126578323 126578434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126580960 126581035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126581432 126581529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126585838 126586002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126586105 126586226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126587558 126587685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126590540 126590642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126591184 126591266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126591595 126591756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126592652 126592762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3948 nt):
ATGACCGGCGAGGTGGGTTCTGAGGTTAACCTGGAAGTCAACGATCTAAAACTTCTTTCACAAGAAGCAG
CAGACAGTCCTGTAGACAGTGGACAGGGCAGCTTTGAAACACTCGAGCCCTTGAGTGAAAGAGATTCTGA
TGAAGAGATTTTTGTGAGCAAGAAACCTAAGAGCAGGAAAGTGTTACAAGACAGCGATTCTGAGGCTGAG
GACAGAGACGATGCTCCGGAGAAACCCACCTACGACGACAGCGCAGAGGACACTCAGGAGAACTTACATT
CAGGGAAGAGTCAGAGCAGAAGCTTTCCCAAAGCCCTGGCTGACAGTGATGAGAGTGACATGGAGGAAAC
TCCGAGTCAGGAGAGTCCTGAGACTCAAGAGGCTCCTTCCTTGGAGCCAGGCCACCAGACAGGACACTCT
GTGGACTTCACCACCGGCAGAAAGCTCTCCAAAACACTCCTCAGAGAAGGAGCTGAGGGAAAAGCAAAAT
CCAAGAGACGGCTGGAGAAAGAGGAGAGAACAATGGAGAAAATCAGGAGACTAAAAAAGAAGGAAACAAG
ATGTGAGGAAAGTGATGCAGACCGGCCGCTTAATGACAGTGGCTGTCTCCTTGAAGATAGTGATCTTTTT
GAGACAGGTTTGGAGGAAGAAAATGACTCTGCACTGGAGGATGAAGAGTCGTTAGAGTCAATAAGGGCGG
CTGTAAAAAACAAGGTGAAAAATCGCAAGAAAAAGGAACCAACTCTGGAGAGTGAGGCTTTTTCATTAGA
AGACGGAAATGAGTTATCCAAAGGCAGTGCGAGGAAGGAAAGAAAGGCAGCGAGGCTAAGTAAGGAAGCA
TTAAAAAAACTGCATAGTGAGACCCAGCGTCTGGTCCGAGAATCTGCACTTAATCTTCCATATCATATGC
CTGAGAGTAAAACTATTCACGATTTCTTCAAACGTAAGCCCCGGCCCACGTGCCAGGGCAGTGCCATGGC
CCTGCTGAAGTCATGTAAGTATCAGTCGGGCCATTACAAGGAAACCGTAAACCCTGCAGATGCAGCTGGA
ATGGGTGCTGAGGACTCCAGCAGAGGTTCTGAGCAGAGGACAGGGGCTGGAATTGCAGCGGAAACTAATG
TTCTCTCTGAGGTCTCAGAAGAAGCCGGGATCACTGCTGGATCAGATGAGGCTTGTGGGAAGGATCCGGT
AAGACGAGGAGAGCTGGAAATTGAGGAGACTGAGAAGCACAGTGATGACAGACCTTATTCTCCTGGGGAC
AGATCCATGTCACAGCAGGAATCCTCCATCCCCAGGATCGAAGACAATGAGGGGCATCAGGCTGGAGACC
TCACCGAATCTGACCCTCCTGCCCTGGAGGGAGAAGAACTGAAAACAGTAGAAAAAACAGACGCAAAAGA
GGGAATGCCTGAACAGAAAACCCAGTCTGCAGCAGCAGCGGCAGTGGCAGTAGTGACGGCGGCGGCGGCG
CCACCTGAAAAGGTGAGACGATTCACCGTGGACCGACTTAGACAGCTGGGAGTGGATGTTTCCAGTCAAC
CTCGGCTGGGCGCTGATGAAGATTCCTTTGTGATACTTGATGAACCTAAAACCAACAGAGAATTGGAAGC
CTTGAAGCAACGTTTCTGGAGGCACGCTAACCCAGCAGCCAGTCCCAGGGCTTGTCAGACGGTGAACGTG
AACATCATCGTGAAGGACTTGGGCACTAACGGGAAGGAGGAGCTGAAGGCAGAAGTGGTACCCGTCACTT
TGGCAGCAGAGAAGCTGGAGGGAGCAAGCCACGCAAAGCCAGGTGAAAAACTGCAGATGTTGAAAGCTAA
GTTGCAGGAGGCAATGAAACTCCGAAGGCTTGAGGAGCGGCAGAAGCGCCAAGCATTATTTAAATTAGAT
AATGAAGATGGATTTGAAGAGGAGGAGGAAGAGGAAGAAATGACAGATGAGTCTGAGGAAGATGGAGAAG
AGGAGACTACAGAATATCTTCTTGGTAGTGAAGATACAGAAACCAAAGATGAAAAAGAAACAGATAAAGA
AAATACAGACACCAGTAGTGACATTGGCAAGTCTGTTGCCCTCTGTGTCCCCAAGCCTCTCTCTTCAGAC
TCCACCTTACTTCTGTTTAAGGACAGCTCTTCTAAGATGGGTTACTTTCCTACTGAAGAAAAGTCAGAAA
CAGATGAATACTTGGCCAAGCAGTCTGACAAACTGGATGAGGATGACTCGAGTTCACTGCTAACAAAGGA
GAGCAGTCACAATAGCAGCTTTGAGCTGATTGGTTCCACAATTCCATCCTATCAGCCTTGCAACAGACAG
ATAGGCCGTGGGGCAAGTTTTCTCCCTACAGCAGGATTCAGATCGCCGTCCCCTGGGCTGTTCCGAGGGA
GTTTGATCAGCTCGGCTTCTAAGAGTTCAGGAAAACTGTCTGAGCCTTCACTTCCCGTAGAGGATTCCCA
GGATCTGTACACCGCCTCCCCAGAGCCTAAGACACTTTTCCTAGGAGCAGGAGACTTCCAGTTCTGTTTG
GAAGATGACACTCAGAGCCAACTGTTGGATGCAGATGGATTTTTAAACATTAGAAATCACCGCCATCGAT
ATCAGGCTGTGAAGCCCCAGTTGCCACTGGCCAGCATGGACGAGAATGCCATGGACGCCAACATGGACGA
GCTGCTGGATTTGTGCACTGGACAGTTTACATCTCAGCCTGAGGAGAAATGTCAACCAAGGAAGAATGAC
AAAAAAGAAAACATGGAGGAACTTTTGAATCTCTGCTCGGGCAAATTTCCTACTCAAGATGCCTCCCCGG
TGGCCCCACTGGGGCTGAGGAGTCAGGAGAAGGAGAGCAGCACAGAAGATCCGATGGAAGAGGCACTTGC
TCTTTGCTCCGGCTCTTTCCCAACAGACAGGGAGGAAGAGGGTGAAGAGGAGGAATTTGGAGACTTCCAG
CTTGTTTCAAAGGAGAATGGATTTGCTAGTGACGAGGATGAACACAGTGACTCCAATGATGAAGAGCTGG
CCCTGGACCTGGAGGATGATGAAGAAGAGCTCCTGAAGCAGTCTGAGAAGATGAAGCGCCAAATGAGACT
GAAGAAATACTTGGAAGATGAGGCAGAGGTGTCAGGCAGTGACGTGGGAAGTGAGGACGAGTACGATGGG
GAGGAGATTGATGAATACGAAGAGGACGTCATTGATGAGGTGCTTCCGTCTGATGAGGAGCTGGAGAGTC
AGATCAAGAAGATACACATGAAAACCATGTTGGATGATGATAAGCGGCGACTACGGTTATATCAAGAGAG
GTACCTTGCTGATGGGGATCTACACAGCGACGGGCCTGGACGAACAAGAAAATTCCGATGGAAACACATA
GATGATACCTCCCAGATGGATCTATTTCACAGAGACTCCGATGACGATCAGGTTGAAGAACAGCTTGACG
AGACCGAAGCCAAGTGGAGGAAGGAACGGATTGAGCGAGAGCAGTGGCTTCGGGAACAGGCTCAACAGGG
GAAAATTGCTGCTGACGAAGAGGACATTGGGGACGACAGTCAGTTTATGATGCTAGCCAAGAAAGTCACA
GCCAAAGCACTGCAGAAGAATGCCAGTCATACTGTGGTTGTTCAGGAATCAAAGTCTGTGCTCAGAAACC
CTTTTGAAACCATCAGACCAGGAGGTGCTCACCAGCTGAAGACAGGCTCCCTGCTAAACCAGCCCAAAGC
TGTGCTCCAAAAACTTGCTGCCCTGTCTGACCTCAACCCCAGCGCTCCCCGAAACTCAAGGAACTTTGTC
TTTCATACACTTTCTCCCACCAAGGCAGAGGCAGCAAAGGACTCATCTAAGCCTCAGGTCAGAAGAAGGG
GACTGTCGTCAATGATGTCACCGTCTCCTAAGCGGCTAAAGACAAACGGAAGCAGTCCAGGGCCAAAGCG
AAGCATCTTCAGATACTTGGAAAGCTAA

Translation (1315 aa):
MTGEVGSEVNLEVNDLKLLSQEAADSPVDSGQGSFETLEPLSERDSDEEIFVSKKPKSRKVLQDSDSEAE
DRDDAPEKPTYDDSAEDTQENLHSGKSQSRSFPKALADSDESDMEETPSQESPETQEAPSLEPGHQTGHS
VDFTTGRKLSKTLLREGAEGKAKSKRRLEKEERTMEKIRRLKKKETRCEESDADRPLNDSGCLLEDSDLF
ETGLEEENDSALEDEESLESIRAAVKNKVKNRKKKEPTLESEAFSLEDGNELSKGSARKERKAARLSKEA
LKKLHSETQRLVRESALNLPYHMPESKTIHDFFKRKPRPTCQGSAMALLKSCKYQSGHYKETVNPADAAG
MGAEDSSRGSEQRTGAGIAAETNVLSEVSEEAGITAGSDEACGKDPVRRGELEIEETEKHSDDRPYSPGD
RSMSQQESSIPRIEDNEGHQAGDLTESDPPALEGEELKTVEKTDAKEGMPEQKTQSAAAAAVAVVTAAAA
PPEKVRRFTVDRLRQLGVDVSSQPRLGADEDSFVILDEPKTNRELEALKQRFWRHANPAASPRACQTVNV
NIIVKDLGTNGKEELKAEVVPVTLAAEKLEGASHAKPGEKLQMLKAKLQEAMKLRRLEERQKRQALFKLD
NEDGFEEEEEEEEMTDESEEDGEEETTEYLLGSEDTETKDEKETDKENTDTSSDIGKSVALCVPKPLSSD
STLLLFKDSSSKMGYFPTEEKSETDEYLAKQSDKLDEDDSSSLLTKESSHNSSFELIGSTIPSYQPCNRQ
IGRGASFLPTAGFRSPSPGLFRGSLISSASKSSGKLSEPSLPVEDSQDLYTASPEPKTLFLGAGDFQFCL
EDDTQSQLLDADGFLNIRNHRHRYQAVKPQLPLASMDENAMDANMDELLDLCTGQFTSQPEEKCQPRKND
KKENMEELLNLCSGKFPTQDASPVAPLGLRSQEKESSTEDPMEEALALCSGSFPTDREEEGEEEEFGDFQ
LVSKENGFASDEDEHSDSNDEELALDLEDDEEELLKQSEKMKRQMRLKKYLEDEAEVSGSDVGSEDEYDG
EEIDEYEEDVIDEVLPSDEELESQIKKIHMKTMLDDDKRRLRLYQERYLADGDLHSDGPGRTRKFRWKHI
DDTSQMDLFHRDSDDDQVEEQLDETEAKWRKERIEREQWLREQAQQGKIAADEEDIGDDSQFMMLAKKVT
AKALQKNASHTVVVQESKSVLRNPFETIRPGGAHQLKTGSLLNQPKAVLQKLAALSDLNPSAPRNSRNFV
FHTLSPTKAEAAKDSSKPQVRRRGLSSMMSPSPKRLKTNGSSPGPKRSIFRYLES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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